View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16233_high_1 (Length: 633)

Name: NF16233_high_1
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16233_high_1
NF16233_high_1
[»] chr6 (4 HSPs)
chr6 (355-617)||(6956571-6956827)
chr6 (9-241)||(6956942-6957174)
chr6 (80-126)||(11321604-11321650)
chr6 (88-125)||(26588611-26588648)
[»] scaffold0024 (1 HSPs)
scaffold0024 (412-617)||(14150-14359)
[»] chr1 (6 HSPs)
chr1 (28-126)||(47132810-47132907)
chr1 (80-126)||(23291778-23291824)
chr1 (80-126)||(26535305-26535351)
chr1 (85-126)||(1742191-1742232)
chr1 (85-126)||(31918900-31918941)
chr1 (18-62)||(24597401-24597445)
[»] chr2 (4 HSPs)
chr2 (17-126)||(43397194-43397302)
chr2 (80-126)||(4904281-4904327)
chr2 (80-126)||(36691792-36691837)
chr2 (31-67)||(10929636-10929672)
[»] chr5 (2 HSPs)
chr5 (31-126)||(11977023-11977118)
chr5 (80-126)||(8096633-8096679)
[»] chr7 (3 HSPs)
chr7 (80-126)||(37837594-37837640)
chr7 (17-67)||(45349873-45349923)
chr7 (18-67)||(3394438-3394487)
[»] chr8 (1 HSPs)
chr8 (17-67)||(3673408-3673458)
[»] chr3 (1 HSPs)
chr3 (80-126)||(47896059-47896105)
[»] chr4 (2 HSPs)
chr4 (85-126)||(9713835-9713876)
chr4 (85-126)||(22305718-22305759)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 355 - 617
Target Start/End: Complemental strand, 6956827 - 6956571
Alignment:
Q  355 tgtagtttatttgagtcttcatatttaaatgatcttaaatcataacatattcattcaagtattacctcctgatattactggaccaaatgtgtaattaatt 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  6956827 tgtagtttatttgagtcttcatatttaaatgatcttaaatcataacatattcattcaagtattacctcctgatattacttgaacaaatgtgtaattaatt 6956728  T
Q  455 gaaattgattgttacttgttcaaattagtttaatatgtaattacttgtagttattgtgatgagctagtctgtattgttactaacggctctatagttagac 554  Q
    |||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |     
T  6956727 gaaattgattgttatttggtcaaattagtttaatatgtaattaattgtagttattgtgatgagctagtctgtattgttactaacggctctat------at 6956634  T
Q  555 tatataaagagaaggtgttctccttctctatgtacagaaagcaaacttctcatatatcatatt 617  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6956633 tatataaagagaaggtgttctccctctctatgtacagaaagcaaacttctcatatatcatatt 6956571  T

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Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 6957174 - 6956942
Alignment:
Q  9 gtgagatgaaacaccacataaaacgacgaacaacacaacaccacaatcagacgacgaaaccacnnnnnnnncacataagaaaaaacttaatatatgtaga 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |    
T  6957174 gtgaaatgaaacaccacataaaacgacgaacaacacaacaccacaatcagacgacgaaaccacggaaaaa-cacataagaaaaaacttaatatatgtaaa 6957076  T
Q  109 aaccacttatttagattgnnnnnnnnnnnnnnnnnnntgcagaacaataactct--gtcaaagagacctaaaacaatcattcctcgatgactgaccgaga 206  Q
    ||||||||||| ||||||                     |||||| ||||||||  ||||||||||| |||||||||||||||||||||| |||||||||    
T  6957075 aaccacttatt-agattgaaaaaagaagataaaaaaaatcagaacgataactctatgtcaaagagacataaaacaatcattcctcgatgagtgaccgaga 6956977  T
Q  207 aaaagaacatatataaaatgtagagtttttcaaac 241  Q
    ||||||||||||||||| |||||||||||||||||    
T  6956976 aaaagaacatatataaactgtagagtttttcaaac 6956942  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 11321604 - 11321650
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  11321604 cacaaaagaaaaaacttaatatatgtgaaaaccacttatttagattg 11321650  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 26588611 - 26588648
Alignment:
Q  88 aaaaaacttaatatatgtagaaaccacttatttagatt 125  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  26588611 aaaaaacttgatatatgtggaaaccacttatttagatt 26588648  T

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Target: scaffold0024 (Bit Score: 165; Significance: 6e-88; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 412 - 617
Target Start/End: Original strand, 14150 - 14359
Alignment:
Q  412 agtattacctcctgatattactggaccaaatgtgtaattaattgaaattgattgttacttgttcaaattagtttaatatgtaattacttgtagttattgt 511  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  14150 agtattacctactgatattacttgaccaaatgtgtaattaattgtaattgattgttacttggtcaaattaatttaatatgtaattaattgtagttattgt 14249  T
Q  512 gatgagctagtctgtattgttactaacggctctatagttagactatataaagagaaggtgttctccttctc----tatgtacagaaagcaaacttctcat 607  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  14250 gatgagctaatctgtattgttactaacggctctatagttagactatataaagagaaggtgttctccttctctatatatgtacagaaagcaaacttctcat 14349  T
Q  608 atatcatatt 617  Q
    ||||||||||    
T  14350 atatcatatt 14359  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 47132907 - 47132810
Alignment:
Q  28 aaaacgacgaacaacacaacaccacaatcagacgacgaaaccacnnnnnnnncacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||||||||||||||||||| || || ||||||||||||| |||        |||| ||||||| |||| ||||||||||||| |||||||||||||||    
T  47132907 aaaacgacgaacaacacaacgccccactcagacgacgaaatcacgaaaaag-cacaaaagaaaacacttgatatatgtagaaatcacttatttagattg 47132810  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 23291778 - 23291824
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| |||||||||||| ||||||||  |||||||||||||||||||    
T  23291778 cacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattg 23291824  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 26535351 - 26535305
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| ||| |||||||||||||||||  |||||||||||||||||||    
T  26535351 cacaaaaggaaaaacttaatatatgtgaaaaccacttatttagattg 26535305  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 1742232 - 1742191
Alignment:
Q  85 aagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  1742232 aagaaaaaacttgatatatgtgaaaaccacttatttagattg 1742191  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 31918941 - 31918900
Alignment:
Q  85 aagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  31918941 aagaaaaaacttgatatatgtgaaaaccacttatttagattg 31918900  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 24597401 - 24597445
Alignment:
Q  18 aacaccacataaaacgacgaacaacacaacaccacaatcagacga 62  Q
    |||||||||||| |||||| ||||||||||| |||| ||||||||    
T  24597401 aacaccacataagacgacgtacaacacaacatcacactcagacga 24597445  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 43397194 - 43397302
Alignment:
Q  17 aaacaccacataaaacgacgaacaacacaacaccacaatcagacgacgaaaccacnnnnnnnncacataagaaaaaacttaatatatgtagaaaccactt 116  Q
    |||| ||||| || ||||||||||||||||| ||||| | ||||||||||| |||        |||| |||||||||||| ||||||||  |||||||||    
T  43397194 aaacgccacacaagacgacgaacaacacaacgccacacttagacgacgaaatcacgaaaaaa-cacaaaagaaaaaacttgatatatgtgaaaaccactt 43397292  T
Q  117 atttagattg 126  Q
    ||||||||||    
T  43397293 atttagattg 43397302  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 4904281 - 4904327
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| |||||||||||| ||||||||  |||||||||||||||||||    
T  4904281 cacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattg 4904327  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 36691837 - 36691792
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  36691837 cacaaaagaaaaaacttgatatatgt-gaaaccacttatttagattg 36691792  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 10929672 - 10929636
Alignment:
Q  31 acgacgaacaacacaacaccacaatcagacgacgaaa 67  Q
    |||||||||||||||||||| || |||||||||||||    
T  10929672 acgacgaacaacacaacaccgcactcagacgacgaaa 10929636  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 11977023 - 11977118
Alignment:
Q  31 acgacgaacaacacaacaccacaatcagacgacgaaaccacnnnnnnnncacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    ||||||||||| ||||| ||||| | ||||||||||| |||        |||| |||||||||||| ||||||||  |||||||||||||||||||    
T  11977023 acgacgaacaatacaacgccacacttagacgacgaaatcacaaaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattg 11977118  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 8096633 - 8096679
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| |||||||||||| ||||||||  |||||||||||||||||||    
T  8096633 cacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattg 8096679  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 37837594 - 37837640
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  37837594 cacaaaagaaaaaacttaatatatgtgtaaaccacttatttagattg 37837640  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 45349873 - 45349923
Alignment:
Q  17 aaacaccacataaaacgacgaacaacacaacaccacaatcagacgacgaaa 67  Q
    |||| ||||| |||||||||||||||||||| ||||| | |||||||||||    
T  45349873 aaacgccacacaaaacgacgaacaacacaacgccacacttagacgacgaaa 45349923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 3394487 - 3394438
Alignment:
Q  18 aacaccacataaaacgacgaacaacacaacaccacaatcagacgacgaaa 67  Q
    ||||||||| || |||||||||||||||||||| || |||||||| ||||    
T  3394487 aacaccacacaagacgacgaacaacacaacaccgcactcagacgatgaaa 3394438  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 3673458 - 3673408
Alignment:
Q  17 aaacaccacataaaacgacgaacaacacaacaccacaatcagacgacgaaa 67  Q
    ||||||| ||||| |||||||||||||||||||| || | |||||||||||    
T  3673458 aaacaccgcataagacgacgaacaacacaacaccgcacttagacgacgaaa 3673408  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 47896105 - 47896059
Alignment:
Q  80 cacataagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||| |||||||||||| ||||||||  |||||||||||||||||||    
T  47896105 cacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattg 47896059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 9713876 - 9713835
Alignment:
Q  85 aagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    |||||||||||| |||||||| |||| |||||||||||||||    
T  9713876 aagaaaaaacttgatatatgtggaaatcacttatttagattg 9713835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 22305718 - 22305759
Alignment:
Q  85 aagaaaaaacttaatatatgtagaaaccacttatttagattg 126  Q
    ||||||||||||  ||||| ||||||||||||||||||||||    
T  22305718 aagaaaaaacttgttatatttagaaaccacttatttagattg 22305759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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