View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16233_high_4 (Length: 448)
Name: NF16233_high_4
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16233_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 22 - 427
Target Start/End: Original strand, 10838364 - 10838745
Alignment:
| Q |
22 |
acaagctttcttctcttgatgaatctgtcataacaaacttaacaaaaacacaagaatcaaactttttcataaacttttattacaatcgcagattgaatta |
121 |
Q |
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| T |
10838364 |
acaagctttcttctcttgatgaatccgtcataacaaacttaacaaaaacacaagaatcaaactttttcataaacttttattacaatcacagattgaatta |
10838463 |
T |
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| Q |
122 |
cacaccttttcaaattgtgattggtaaaacgaatttcatgaaagtaagagagaggaagacatgtttgtgcatctatgagaggtgttacgattgttattaa |
221 |
Q |
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| T |
10838464 |
cacaccttttcaaattg-------------gaatttcatgaaagtaagagagaggaagacatgtttgtgcatctatgagaggtgctacgattgttattaa |
10838550 |
T |
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| Q |
222 |
gaggaagaataagaataagactgagggtgagttgggcgacgtgatgtggagcata-gggggacggcaccgccgctgtatggacaaaagggggagcggtgg |
320 |
Q |
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| T |
10838551 |
gaggaagaataagaataagaccgagggtgagttgggcgacgtgatgtggagtataggggggacggcaccgccgctgtatggacaaaagggagagcggtgg |
10838650 |
T |
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| Q |
321 |
cgtcaccagcaagagggaga-gggagaggtggcagcaacacctaatgatggtgagaagatgaacaacgcgtaggttgtgaatagagaggaagaggagaag |
419 |
Q |
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| T |
10838651 |
catcgccagcaagagggagaggggagaggtggaagcaacaccgaatgatggtg-------------cgcgtaggttgtgaatagagaggaagaggagaag |
10838737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 10148030 - 10148164
Alignment:
| Q |
16 |
ctgaacacaagctttcttctcttgatgaatctgtcataacaaacttaacaaaaacacaagaatcaaactttttcataaacttttattacaatcgcagatt |
115 |
Q |
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| T |
10148030 |
ctgaacacaagctttcttctcttgatgaatccgtcataacccacttaacaaaaacacacaaatcaaactttttcataaacttttattacaatcatagttt |
10148129 |
T |
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| Q |
116 |
gaattacacaccttttcaaattgtgattggtaaaa |
150 |
Q |
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| T |
10148130 |
gagttacacaccttttcagattgtgattggtaaaa |
10148164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 239 - 427
Target Start/End: Original strand, 10148352 - 10148545
Alignment:
| Q |
239 |
agactgagggtgagttgggcgacgtgatgtggagcata-gggggacggcaccgccgctgtatggacaaaagggggag-cggtggcgtcaccagcaagagg |
336 |
Q |
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| T |
10148352 |
agactgagggtaagttgggcgaggtgatgtggagcacaagggggagggtgccgccgctgtatggatggaagggggcggcgttgtcgtcgccggcgagagg |
10148451 |
T |
|
| Q |
337 |
gagagggagaggtggcagcaacac---ctaatgatggtgagaagatgaacaacgcgtaggttgtgaatagagaggaagaggagaagagcgcgtg |
427 |
Q |
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| T |
10148452 |
gagtgggagtggtggcagcaacacacactgatgatgttgagaagatgaacagtgcgtagattgtgaatagggaggaggaggagaagagcgcgtg |
10148545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 32159047 - 32159176
Alignment:
| Q |
16 |
ctgaacacaagctttcttctcttgatgaatctgtcataacaaacttaacaaaaacacaagaatcaaactttttcataaacttttattacaatcgcagatt |
115 |
Q |
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|||||||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
32159047 |
ctgaacacaaaatttcttctcttgacgaatccgtcataacaaacttaacaaaaa--------tcaaactttttcataaacttttattacaatcagagatt |
32159138 |
T |
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| Q |
116 |
gaattacacaccttttcaaattgtgattggtaaaacga |
153 |
Q |
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| T |
32159139 |
gaattacacaccctttcagattgtgattggtaaaacga |
32159176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 32159357 - 32159453
Alignment:
| Q |
332 |
agagggagagggagaggtggcagcaacac-ctaatgatggtgagaagatgaacaacgcgtaggttgtgaatagagaggaagaggagaagagcgcgtg |
427 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
32159357 |
agagggagagggagaggtggcagcaacatactaatgatggtgagaagatgaacatcgcgtaggttgtgaacagagagcaagaggagaagagcgcgtg |
32159453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 16876522 - 16876610
Alignment:
| Q |
152 |
gaatttcatgaaagtaagagagaggaagacatgtttgtgcatctatgagaggtgttacgattgttattaagaggaagaataagaataag |
240 |
Q |
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| T |
16876522 |
gaatttcaggaaagtaagatagaggaagacatgtttgtgcatctatcaatggtgctacgattgttattaagaggaagaataagaataag |
16876610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 30476431 - 30476374
Alignment:
| Q |
16 |
ctgaacacaagctttcttctcttgatgaatctgtcataacaaacttaacaaaaacaca |
73 |
Q |
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||||||| || |||||||||||||||||||| |||| ||| |||||||||||||||| |
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| T |
30476431 |
ctgaacaaaaactttcttctcttgatgaatccgtcacaacccacttaacaaaaacaca |
30476374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 30476279 - 30476247
Alignment:
| Q |
117 |
aattacacaccttttcaaattgtgattggtaaa |
149 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
30476279 |
aattacacaccttttcagattgtgattggtaaa |
30476247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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