View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16233_high_6 (Length: 339)
Name: NF16233_high_6
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16233_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 12618817 - 12619138
Alignment:
| Q |
8 |
gaaaagaatggtttggaaagtgattataaagaaaaagtaaagatggagtatgannnnnnnnnnnnagggtcagttttggcggttactaagaaaaggaagt |
107 |
Q |
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| T |
12618817 |
gaaaagaatggtttggaaagtgattataaagaaaaagtaaagatggagtatgatgtgtgtgtgtgagggtcagttttggcggttactaagaaaaggaagt |
12618916 |
T |
|
| Q |
108 |
tgaggtgtggagaaaaatgggggaacatagtgttaatatatannnnnnnnnatttaaacaaagaagtaactaaattcnnnnnnnnnnnnnnnnaaatgaa |
207 |
Q |
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| T |
12618917 |
tgaggtgtggagaaaaatgggggaacatagtgttaatatat-tttttttttatttaaacaaagaagtaactaaattcttttttatatttttt-aaatgaa |
12619014 |
T |
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| Q |
208 |
attatctagattcttttttgactaaatgtgtgcaactagatttggacctataacatcttgcaaaccactaaaaatataagactgttc--------tatat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12619015 |
attatctagattcttttttgactaaatgtgtgcaactagatttggacctataacatcttgcaaaccactaaaaatataagactgttctttatacatatat |
12619114 |
T |
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| Q |
300 |
ggtgatttttctcagcatccatca |
323 |
Q |
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|||||||||| ||||||||||||| |
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| T |
12619115 |
ggtgatttttatcagcatccatca |
12619138 |
T |
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