View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16233_high_7 (Length: 309)
Name: NF16233_high_7
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16233_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 3801080 - 3800799
Alignment:
| Q |
16 |
cttctctccaacaagtaaataagaaactgaacaaagccattgaaaagccatcttcattgtttgaaagaaatatattcaaacaa---acataattttccat |
112 |
Q |
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| T |
3801080 |
cttctctccaacaagtaaataagaaactgaacaaagccattgaaaagccatcttcattgtt-gaaagaaatatattcaaacaacaaacataattttccat |
3800982 |
T |
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| Q |
113 |
tcttcgtcttctctgtcatcgatggatcaccaccgatctgatctgatcttttaaattaagtccatattttgcaaatgaattttgtaatttcgcagcatag |
212 |
Q |
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| T |
3800981 |
tcttcatcttctctgtcatcgatggatcaccaccgatctgatctgatcttttaaattaagtccatattttgcaaatgaattttgtaatttcgcagcatag |
3800882 |
T |
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| Q |
213 |
gtaattaaagaatgttgatgtaatttcattaaaaaagagatgttagtgttgtaaatcacacagttgagaaataggtttcacag |
295 |
Q |
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| T |
3800881 |
gtaattaaagaatgttgatgtaatttcattaaaaaagagatgtcagtgttgtaaatcacacagttgagaaataagtttcacag |
3800799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 3990528 - 3990385
Alignment:
| Q |
16 |
cttctctccaacaagtaaataagaaactgaacaaagccattgaaaagccatcttcattgtttgaaagaaatatattca---aacaaacataattttccat |
112 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
3990528 |
cttctctccaacaggtaaataagaaactgaacaaagccattgaaaagccatcttcattg-ttgaaagacatatattcaaacaacaaacataattttccat |
3990430 |
T |
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| Q |
113 |
tcttcgtcttctctgtcatcgatgga-tcaccaccgatctgatct |
156 |
Q |
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| T |
3990429 |
tcttcgtcctctctgtcatccatggattcaccaccgatctgatct |
3990385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 3990338 - 3990224
Alignment:
| Q |
166 |
aattaagtccatattttgcaaatgaattttgtaatttcgcagcataggtaattaaagaatgttgatgtaatttcattaaaaaagagatgttagtgttgta |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
3990338 |
aattaagtccatattttgcaaatgaattttgtaatttcgcagcataggtaat--------------gtaatttcattaaaaa-gagatgttagtgttgta |
3990254 |
T |
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| Q |
266 |
aatcacacagttgagaaataggtttcacag |
295 |
Q |
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| T |
3990253 |
aatcacacaattgagaaataggtttcacag |
3990224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 39716991 - 39716937
Alignment:
| Q |
166 |
aattaagtccatattttgcaaatgaattttgtaatttcgcagcataggtaattaa |
220 |
Q |
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|||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
39716991 |
aatttagtccatattttgcgaatgaattttgtaaatttgcagcataggtaattaa |
39716937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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