View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16233_high_9 (Length: 286)
Name: NF16233_high_9
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16233_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 12577778 - 12578028
Alignment:
| Q |
18 |
tgttgtttccttgaaaatcacttgattcttcaatttgccaaaaaagaggttttaagtagtgaacacagattttgcctgtgtgtgttgacacggtttgaca |
117 |
Q |
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| T |
12577778 |
tgttgttttcttgaaaatcacttgattcttcaatttgccaaaaaagaggttttaagtagtgaacacagattttgcctatgtg--ttgacacggttcgaca |
12577875 |
T |
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| Q |
118 |
atactggtgtttccatgttgcaaacttgcaacaatttcacaagggtattagtgaaattaaaataaaaaagtggatttctccctttcttctctattttgga |
217 |
Q |
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| T |
12577876 |
atacttatgtttccatgttgcaaacttgcaacaatttcacaagggtattagtggaattaaaataaaaaagtggacttctctctttcttctcaattttgga |
12577975 |
T |
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| Q |
218 |
gagactaaaaacagccgtgggtcccgtgtgtttttatctctcttccctctttc |
270 |
Q |
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| T |
12577976 |
gaaactaaaaataactgtgggtcccgtgtgtttttatctctcttccctctttc |
12578028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 124 - 270
Target Start/End: Complemental strand, 31251552 - 31251403
Alignment:
| Q |
124 |
gtgtttccatgttgcaaactt-gcaacaatttcacaagggtattagtgaaattaaaataaaaaagtggatttctcc---ctttcttctctattttggaga |
219 |
Q |
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| T |
31251552 |
gtgtttccatgttgcaaactttgcaacaattttataaggttattagtggaattaaaataaaaaagtgaacttctactctctttcttctctattttggaga |
31251453 |
T |
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| Q |
220 |
gactaaaaacagccgtgggtcccgtgtgtttttatctctcttccctctttc |
270 |
Q |
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| T |
31251452 |
gactaaaaacgatcgtgggtcccatgtg-ttttatctctcttccctctttc |
31251403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 270
Target Start/End: Original strand, 43885459 - 43885605
Alignment:
| Q |
124 |
gtgtttccatgttgcaaacttgcaacaatttcacaagggtattagtgaaattaaaataaaaaagtggatttct---ccctttcttctctattttggagag |
220 |
Q |
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| T |
43885459 |
gtgttttcatgttgcaagcttgcaa---tttcataagggtataagtgggattaaaataaaaatgtggactcctattctctttcttctctattttggagag |
43885555 |
T |
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| Q |
221 |
actaaaaacagccgtgggtcccgtgtgtttttatctctcttccctctttc |
270 |
Q |
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| T |
43885556 |
actaaaaacagccatgggtcccacatgtttttatctctcttccctctttc |
43885605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 270
Target Start/End: Complemental strand, 24345743 - 24345597
Alignment:
| Q |
124 |
gtgtttccatgttgcaaacttgcaacaatttcacaagggtattagtgaaattaaaataaaaaagtggatttct---ccctttcttctctattttggagag |
220 |
Q |
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| T |
24345743 |
gtgttttcatgttgcaagcttgcaa---tttcataagggtataagtgggattaaaataaaaaagtggactcctattctctttcttctctatttcggagag |
24345647 |
T |
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| Q |
221 |
actaaaaacagccgtgggtcccgtgtgtttttatctctcttccctctttc |
270 |
Q |
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| T |
24345646 |
actaaaaacagccatgggtcccacatgttttgatctctcttccctctttc |
24345597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 270
Target Start/End: Complemental strand, 28254749 - 28254603
Alignment:
| Q |
124 |
gtgtttccatgttgcaaacttgcaacaatttcacaagggtattagtgaaattaaaataaaaaagtggatttct---ccctttcttctctattttggagag |
220 |
Q |
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| T |
28254749 |
gtgttttcatgttgcaagcttgcaa---tttcataagggtataagtgggattaaaataaaaaagtggactcctattctctttcttctctattttgaagag |
28254653 |
T |
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| Q |
221 |
actaaaaacagccgtgggtcccgtgtgtttttatctctcttccctctttc |
270 |
Q |
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||||| ||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
28254652 |
actaataacagccatgggtcccacatgtttttatctctcttccctctttc |
28254603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 50674612 - 50674479
Alignment:
| Q |
136 |
tgcaaacttgcaacaatttcacaagggtattagtgaaattaaaataaaaaagtggatttctccctttcttctctattttggagagactaaaaacagccgt |
235 |
Q |
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| T |
50674612 |
tgcaaacttacaacaatttcacgagggtattagtggaataaaaagaaaaa-gtgtgtttctctatttcttcgctactttggagagattaaaaagagatgt |
50674514 |
T |
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| Q |
236 |
gggtcccgtgtgtttttatctctcttccctctttc |
270 |
Q |
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| T |
50674513 |
ggatcccatgtatttttatctctcttctctctttc |
50674479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 29992824 - 29992727
Alignment:
| Q |
133 |
tgttgcaaacttgcaacaatttcacaagggtattagtgaaattaaaataaaaaagtggatttctcc---ctttcttctctattttggagagactaaaa |
227 |
Q |
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| T |
29992824 |
tgttgcaaacttgcaacaatttcacaagggcattagtggaataaaaaataaaaagtgggtttcttctttgtttcttcactactttggagagactaaaa |
29992727 |
T |
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