View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16233_low_1 (Length: 803)
Name: NF16233_low_1
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16233_low_1 |
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| [»] scaffold0232 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 9 - 799
Target Start/End: Original strand, 42392028 - 42392823
Alignment:
| Q |
9 |
acatcatcaaaatgacctagaactaacatccttaaaacaaccttagaaaaggcaagataaacttcaagaagctaagaagggaagccatggaaactgtttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42392028 |
acatcatcaaaatgacctagaactaacatccttaaaactaccttagacaaggcaagataaacttcaagaagctaagaagggaagccatgaaaactgtttg |
42392127 |
T |
|
| Q |
109 |
agaaactggtaaaataaataaaccgcnnnnnnn---aacacaaaccggttctgaaccggacccaaagcaaacctgaactgtttcgtnnnnnnn-ttggtt |
204 |
Q |
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||||||||||||||| |||||||||| || |||||| ||||||||||||||||||| ||||| |||||| |||||| |||||| |
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| T |
42392128 |
agaaactggtaaaatgaataaaccgcttttttttttaatgcaaaccagttctgaaccggacccaaaacaaacttgaactatttcgtaaaaaaaattggtt |
42392227 |
T |
|
| Q |
205 |
ttttctgaaacagtttaagaaaccaaaccataaattggatatggtttggtttggtttatgaaccatgcacactcctagttataacaacttaacaagaagt |
304 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392228 |
ttttctgaaacaggttaagaaaccaaaccataaattgaatatggtttggtttgatttatgaaccatgcacactcctagttataacaacttaacaagaagt |
42392327 |
T |
|
| Q |
305 |
atatccattaggtcactcaacacct-ggtatgaacctctttcccgcaacactactaacaatacacatggccatttcaaatgagtaatatttatgaatttt |
403 |
Q |
| |
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||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392328 |
ataaccattacgtcactcaacaccttggtatgaacctctttcccgcaacactgctaacaatacacatggccatttcaaatgagtaatatttatgaatttt |
42392427 |
T |
|
| Q |
404 |
aaaaggtaaatatgtgcttaaattttaagactgaagaatacaccgtatgtatcaaaaagaagcatgttaacatgaaaagtaccagttataattggctcat |
503 |
Q |
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| T |
42392428 |
aaaaggtaaatatgtgcttaaattttaagacagaagaatacactgtatgtatcgaaaagaagcatgtcaacatgaaaagtaccagttataattggctcat |
42392527 |
T |
|
| Q |
504 |
cttcaaacttttcagacaaatgaaaacaaatttctcttccatttttatttagtgtagctaaataaattatttagactaaacttcaagtagcacacatcta |
603 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
42392528 |
cttcaaacttttcagacaaatgaaaacaaatttctcttccatttttatttagtgtagctaaataaattattgagactaaacttcaagtagcccacatcta |
42392627 |
T |
|
| Q |
604 |
aatacaagtattcattctgattttatatgttgatgtaataatgtttttgcagactttaagctatttagattatctcaaattcaaagcattatacacaact |
703 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392628 |
aatacaagtattcattttgattttatatgttgatgtaataatgtttttgcagactttaagctatttagattatctcaaattcaaagcattatacacaact |
42392727 |
T |
|
| Q |
704 |
ggagtacatatttttattgaaaacatttgaaagagaattaaaatgctcagacaaatactcgatacataaagcgcaagagattatactagcattgag |
799 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42392728 |
ggagtacatatttttattgaaaacatttgaaagagaatgaatatgctcagacaaatacttgatacataaagcgcaagagattatactagcattgag |
42392823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 488 - 651
Target Start/End: Original strand, 42386634 - 42386808
Alignment:
| Q |
488 |
gttataattggctcatcttcaaacttttcagacaaatgaaaacaaatttctcttccattttt---attt-------agtgtagctaaataaattattt-a |
576 |
Q |
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|||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| | |
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| T |
42386634 |
gttatatttggttcatcttcaaattttttcgacaaatgaaaacaaaattctcttccatttttcttattttttatacagtgtagctaaataaattatttaa |
42386733 |
T |
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| Q |
577 |
gactaaacttcaagtagcacacatctaaatacaagtattcattctgattttatatgttgatgtaataatgttttt |
651 |
Q |
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| T |
42386734 |
gactaaacctaaagtaaaccacatcttaatgtaagttttcattccgattttatttgctaatgtaataatgttttt |
42386808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 655 - 799
Target Start/End: Original strand, 42375951 - 42376095
Alignment:
| Q |
655 |
gactttaagctatttagattatctcaaattcaaagcattatacacaactggagtacatatttttattgaaaacatttgaaagagaattaaaatgctcaga |
754 |
Q |
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||||| || |||||| |||||||||||||||| ||||||| ||||||| || ||| ||| || |||||||||||||||||||| || |||||| |
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| T |
42375951 |
gacttaaaactatttttattatctcaaattcaacacattatagacaactgagataaatactttgatcgaaaacatttgaaagagaatgaatttgctcatt |
42376050 |
T |
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| Q |
755 |
caaatactcgatacataaagcgcaagagattatactagcattgag |
799 |
Q |
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| T |
42376051 |
aatatacttgatacataaatagcaaatgattatatcagcattgag |
42376095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 4010590 - 4010623
Alignment:
| Q |
248 |
gtttggtttggtttatgaaccatgcacactccta |
281 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
4010590 |
gtttggtttggtttatgaaccatgcacaccccta |
4010623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 275
Target Start/End: Complemental strand, 21452 - 21423
Alignment:
| Q |
246 |
tggtttggtttggtttatgaaccatgcaca |
275 |
Q |
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| T |
21452 |
tggtttggtttggtttatgaaccatgcaca |
21423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 7528163 - 7528122
Alignment:
| Q |
248 |
gtttggtttggtttatgaaccatgcacactcctagttataac |
289 |
Q |
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| T |
7528163 |
gtttggtttggttcatgaatcatgcacacccctagttataac |
7528122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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