View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16233_low_17 (Length: 217)

Name: NF16233_low_17
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16233_low_17
NF16233_low_17
[»] chr7 (2 HSPs)
chr7 (18-99)||(43460293-43460374)
chr7 (155-207)||(43460430-43460482)
[»] chr2 (2 HSPs)
chr2 (18-99)||(32469768-32469845)
chr2 (159-207)||(32469657-32469708)
[»] chr4 (1 HSPs)
chr4 (18-87)||(1520424-1520490)
[»] chr3 (1 HSPs)
chr3 (18-87)||(54749707-54749773)
[»] chr1 (1 HSPs)
chr1 (18-87)||(5612506-5612572)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 43460293 - 43460374
Alignment:
Q  18 gagagtatatttatggtggtgttttgtcacaaaacaaacaatgtgtggtggtctagatctaaaatgaaagcgtggttttaag 99  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  43460293 gagagtatatttatggtggtgttttgtcacgaaacaaacaatttgtggtggtctagatctaaaatgaaagtgcggttttaag 43460374  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 43460430 - 43460482
Alignment:
Q  155 atgcgaattgaaagggttgtcattgttgtgttgctgatgtttcttgatgatga 207  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43460430 atgcgaattgaaagggttgtcattgttgtgttgctgatgtttgttgatgatga 43460482  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 32469845 - 32469768
Alignment:
Q  18 gagagtatatttatggtggtgttttgtcacaaaacaaacaatgtgtggtggtctagatctaaaatgaaagcgtggttttaag 99  Q
    ||||||||||||||||||||||||||||||     ||||||| |||| |||||||||||||||||||||  |||||||||||    
T  32469845 gagagtatatttatggtggtgttttgtcac----gaaacaatttgtgatggtctagatctaaaatgaaaatgtggttttaag 32469768  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 32469708 - 32469657
Alignment:
Q  159 gaattgaaagggttgtcattgttgtgtt---gctgatgtttcttgatgatga 207  Q
    ||||||||||||||||||||||||||||   |||||||||| ||||||||||    
T  32469708 gaattgaaagggttgtcattgttgtgttgctgctgatgtttgttgatgatga 32469657  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1520490 - 1520424
Alignment:
Q  18 gagagtatatttatggtggtgttttgtcacaaaacaaacaatgtgtggtggtctagatctaa-aatgaaag 87  Q
    |||||||| |||||||||||| ||||||||     ||||||| ||||||||||||||||||| ||||||||    
T  1520490 gagagtatgtttatggtggtggtttgtcac----gaaacaatttgtggtggtctagatctaacaatgaaag 1520424  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 54749773 - 54749707
Alignment:
Q  18 gagagtatatttatggtggtgttttgtcacaaaacaaacaatgtgtggtggtctagatctaa-aatgaaag 87  Q
    |||||||| |||||||||||| ||||||||     ||||||| ||||||||||||||||||| ||||||||    
T  54749773 gagagtatgtttatggtggtggtttgtcac----gaaacaatttgtggtggtctagatctaacaatgaaag 54749707  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 5612506 - 5612572
Alignment:
Q  18 gagagtatatttatggtggtgttttgtcacaaaacaaacaatgtgtggtggtctagatctaa-aatgaaag 87  Q
    |||||||| |||||||||||| ||||||||     ||||||| ||||||||||||||||||| ||||||||    
T  5612506 gagagtatgtttatggtggtggtttgtcac----gaaacaatttgtggtggtctagatctaacaatgaaag 5612572  T

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