View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16233_low_3 (Length: 631)
Name: NF16233_low_3
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16233_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 14544749 - 14545363
Alignment:
| Q |
1 |
tccgccggaattcaagatgacgtggcatctaatatcatgaaagctaaaattgcttctcatccttattatcctcgccttcttcaagcctatatcgattgtc |
100 |
Q |
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| T |
14544749 |
tccgccggaattcaagatgacgtggcatctaatatcatgaaagctaaaattgcttctcatccttattaccctcgccttcttcaagcctatatcgattgtc |
14544848 |
T |
|
| Q |
101 |
aaaaggtaaa-ttaaactaagtttgatcgtaactactctgcaacgtgacggtcttaatctagtttaacgaatttctgcaattgctaataaattgtttagg |
199 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
14544849 |
aaaaggtaaaattaaactaagtctgatcgtaactactctgcaacgtgacggtcttaatccagtttaacgaatttctataattgctaataaattgtttagg |
14544948 |
T |
|
| Q |
200 |
ttggtgctcctcctgaaattgcaagtttattggaagagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccga |
299 |
Q |
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| T |
14544949 |
ttggtgctcctcctgaaattgcaagtttattggaggagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccga |
14545048 |
T |
|
| Q |
300 |
tcccgagcttgatgaatttatggt-ccccccttaaatcctttctttctttctttgtttcgctcgcacgaacacaaaaatatattta-nnnnnnnatttta |
397 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| | || |||||| |
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| T |
14545049 |
tcccgagcttgatgaatttatggtcccccccttaaatc----ctttctttctttgtttcgcttgcacgaacacaaaaatatttatattttttttatttta |
14545144 |
T |
|
| Q |
398 |
ttgaaaataaataaattaaatgcaactttattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttact |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14545145 |
ttgaaaataaataaattaaatgcaactttattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttact |
14545244 |
T |
|
| Q |
498 |
cgaccttttgacgaagctaaaacgtttctgaacaagatcgaaactcaactcagtcatctctgcactggtggtggtgctgctgctgcttcacttccaactg |
597 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14545245 |
cgaccttttgacgaagctacaacgtttctgaacaagatcgaaactcaactcagtcatctctgcac---tggtggtgctgctgctgcttcacttccaactg |
14545341 |
T |
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| Q |
598 |
cttctggtttgtttttcttctc |
619 |
Q |
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|||||||||||||||||||||| |
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| T |
14545342 |
cttctggtttgtttttcttctc |
14545363 |
T |
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