View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16233_low_4 (Length: 453)
Name: NF16233_low_4
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16233_low_4 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 33644228 - 33644664
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaagtattcgttgccatccttgcatagcttatattgtttgcgtagcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644228 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaagtattcgttgccatccttgcatagcttatattgtttgcgtagcatt |
33644327 |
T |
|
| Q |
101 |
gacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaaatttagggggaaactattttgtgacactac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644328 |
gacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaaatttagggggaaactattttgtgacactac |
33644427 |
T |
|
| Q |
201 |
ctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattgggcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644428 |
ctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattgggcg |
33644527 |
T |
|
| Q |
301 |
ggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644528 |
ggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttca |
33644627 |
T |
|
| Q |
401 |
tggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644628 |
tggatgatacaattcattcaggcaaacctacaatcct |
33644664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 56 - 436
Target Start/End: Complemental strand, 33399319 - 33398939
Alignment:
| Q |
56 |
tattcgttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacatt |
155 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| | |||||||||||| |||| ||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
33399319 |
tatttgttgccatccttgcatagcttagattgtttgcgtggagttgacattagcttttgcaatctaagccaagttcctgatgcaattgaagatttacatt |
33399220 |
T |
|
| Q |
156 |
cgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagtt |
255 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33399219 |
ggctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaatttggaacactgcaagtt |
33399120 |
T |
|
| Q |
256 |
gttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33399119 |
gttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgagatgagaatgacgatgactggatttcaggattggtcattttcaactgt |
33399020 |
T |
|
| Q |
356 |
tcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcc |
436 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || | ||||||| |
|
|
| T |
33399019 |
tcaaaattgggtgagagggaacgttgcagtagcatgacattttcatggatgatacaattcattctggccaatccacaatcc |
33398939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 61 - 437
Target Start/End: Complemental strand, 33262886 - 33262510
Alignment:
| Q |
61 |
gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgcta |
160 |
Q |
| |
|
|||||| ||||||| ||| ||| |||||||||||| ||||||| |||| |||| |||| |||| || |||| |||||||||| ||||||| |||| |
|
|
| T |
33262886 |
gttgccttccttgcgtagtttacattgtttgcgtaatgttgacataagcttttgctatctacgccaagtgcctggcacaattgaatgcttacattggcta |
33262787 |
T |
|
| Q |
161 |
gaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgg |
260 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
33262786 |
gaaagattaaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttgg |
33262687 |
T |
|
| Q |
261 |
aatctttgcctcaacttccttcccctaccactattgggcgggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgttcaaa |
360 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||| | |||||| || || | || | ||||||||||||||||||||||| |||| |
|
|
| T |
33262686 |
aatctttgcctcaacttccttctcctacctctattgggcgggatcatcgtgagaaggagtataagttgaatacaggattggtcattttcaactgtccaaa |
33262587 |
T |
|
| Q |
361 |
attgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||| ||| |||||||| |
|
|
| T |
33262586 |
attgggtgagagggaacgttgcagtagcatgacattttcatggacgacacaattcattcaagcataccaacaatcct |
33262510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 99 - 424
Target Start/End: Original strand, 31562607 - 31562935
Alignment:
| Q |
99 |
ttgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaaatttagggggaaactattttgtgacact |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31562607 |
ttgacattagcttttgccgtctaagccaagtgcctgatgcaattgaatgtttaagctcgctagaaagattaaatttagggggaaactattttgtgacact |
31562706 |
T |
|
| Q |
199 |
acctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattggg |
298 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31562707 |
acctagcttgtggaagctttccaaacttgtatatttaaatttggagcattgcgagttgttggaatctttgcctcaacttccttctcctaccactattggg |
31562806 |
T |
|
| Q |
299 |
cgggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatga |
392 |
Q |
| |
|
||||| || |||||| | ||| |||| | |||||||||||||||| |||||| | ||||||| |||||||||| | |||||||||||||| |
|
|
| T |
31562807 |
cgggatcgtcgtgagaacaa--atg-gtggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatga |
31562903 |
T |
|
| Q |
393 |
cattttcatggatgatacaattcattcaggca |
424 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |
|
|
| T |
31562904 |
cattttcatggatggcacaattcattaaggca |
31562935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 56 - 437
Target Start/End: Complemental strand, 33304749 - 33304368
Alignment:
| Q |
56 |
tattcgttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacatt |
155 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| | |||||||||||| ||||| ||||||||| ||||||||| |||||||||||||| | | |
|
|
| T |
33304749 |
tatttgttgccatccttgcatagcttagtttgtttgcgagacgttgacattagcttttgccatctaagccaagttcctgatgcaattgaatgtttatact |
33304650 |
T |
|
| Q |
156 |
cgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagtt |
255 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||| |
|
|
| T |
33304649 |
cgctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaatttgcagcattgcatgtt |
33304550 |
T |
|
| Q |
256 |
gttggaatctttgcctcaacttccttcccctaccactat--tgggcgggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaact |
353 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| | | | |||| | | | || | ||||| | |||||||| |||||||||||| |
|
|
| T |
33304549 |
gttggaatctttgcctcaacttccttctcctaccaatattattcgtgagaacaaca--aatatttctggatctggcctacaggattgttcattttcaact |
33304452 |
T |
|
| Q |
354 |
gttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||| |||||||| |
|
|
| T |
33304451 |
gtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggttgacacaattcattgaggcaaactcacaatcct |
33304368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 61 - 428
Target Start/End: Complemental strand, 33057829 - 33057459
Alignment:
| Q |
61 |
gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgcta |
160 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||| ||||||| |||| |||| |||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
33057829 |
gttgccttccttgcatagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatgcaattgaatgtttacattggcta |
33057730 |
T |
|
| Q |
161 |
gaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgg |
260 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
33057729 |
gaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaatttggagcattgcaaattgttgg |
33057630 |
T |
|
| Q |
261 |
aatctttgcctcaacttccttcccctaccactattgggcggg---aacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgttc |
357 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||| || | || || | | ||| || | || | |||||||| |||||||||||||| | |
|
|
| T |
33057629 |
aatctttgcctcaacttccttttcctaccaatactggggaggttcatcgtgagtacgacgactatttttgtggtgcaggattgctcattttcaactgtcc |
33057530 |
T |
|
| Q |
358 |
aaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacc |
428 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||||||||| |
|
|
| T |
33057529 |
aaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacc |
33057459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 56 - 433
Target Start/End: Complemental strand, 33388425 - 33388042
Alignment:
| Q |
56 |
tattcgttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacatt |
155 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||| |||||||||||| ||| | ||||| || ||||| |||||||||||||||||||| | |
|
|
| T |
33388425 |
tatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacact |
33388326 |
T |
|
| Q |
156 |
cgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagtt |
255 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
33388325 |
cactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagtt |
33388226 |
T |
|
| Q |
256 |
gttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgagatgaga------atgacgatgtctggatttcaggattggtcattttc |
349 |
Q |
| |
|
||| ||||||| |||||||||||||| | |||||||||||||||||| | ||||| || | || ||||| |||||||| || ||||| |
|
|
| T |
33388225 |
cttgaaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgagaacaagcataagtttgggtggatcacaggattgatcgttttc |
33388126 |
T |
|
| Q |
350 |
aactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaa |
433 |
Q |
| |
|
|||||| ||||| ||||||| ||||| ||||||| |||||||||||||||||||||| |||||| ||| ||||||||| |||| |
|
|
| T |
33388125 |
aactgtccaaaactgggtgatagggagtgttgcagtagcatgacattttcatggatgacacaatttattaaggcaaaccgacaa |
33388042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 89 - 303
Target Start/End: Complemental strand, 33272057 - 33271843
Alignment:
| Q |
89 |
ttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaaatttagggggaaactatt |
188 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||| |
|
|
| T |
33272057 |
ttgcgtagcattgacattagcttttgccatctacgccaagttcctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaatt |
33271958 |
T |
|
| Q |
189 |
ttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttccttcccctac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || | |
|
|
| T |
33271957 |
ttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcgacttccttctccacc |
33271858 |
T |
|
| Q |
289 |
cactattgggcggga |
303 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
33271857 |
tactagtgggcggga |
33271843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 112 - 315
Target Start/End: Complemental strand, 33359076 - 33358873
Alignment:
| Q |
112 |
ttgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgagg |
211 |
Q |
| |
|
||||| |||||| || ||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33359076 |
ttgccatctaagtcaagttcccgatgcaattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgagg |
33358977 |
T |
|
| Q |
212 |
aagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgagatg |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
33358976 |
aagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatg |
33358877 |
T |
|
| Q |
312 |
agaa |
315 |
Q |
| |
|
|||| |
|
|
| T |
33358876 |
agaa |
33358873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 62 - 293
Target Start/End: Complemental strand, 33410264 - 33410033
Alignment:
| Q |
62 |
ttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctag |
161 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| ||||||| ||||| ||||| ||| ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
33410264 |
ttgccatcattgcatagcttatattgtttgcgtcaagttgatattagcttttgccatctaaaccaagttcctgatgcaattgaaggtttacattcgctag |
33410165 |
T |
|
| Q |
162 |
aaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgga |
261 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| | || |||||||||||||| |
|
|
| T |
33410164 |
aaagattatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttagatttgcagcattgcaagttgttgga |
33410065 |
T |
|
| Q |
262 |
atctttgcctcaacttccttcccctaccacta |
293 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
33410064 |
atctttgcctcaacttccttttcctaccacta |
33410033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 68 - 428
Target Start/End: Complemental strand, 9167005 - 9166645
Alignment:
| Q |
68 |
tccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagat |
167 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||| | |||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
9167005 |
tccttgcgtagtttatattgtttgcgtgaagttgacattagctattgccatctaagccaattgcctgatacaattgaatgtttacggtggctagaaagat |
9166906 |
T |
|
| Q |
168 |
taaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatcttt |
267 |
Q |
| |
|
|||| |||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||||||| | ||| |
|
|
| T |
9166905 |
taaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttggagttttt |
9166806 |
T |
|
| Q |
268 |
gcctcaacttccttcccctaccactattgggcgggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggt |
367 |
Q |
| |
|
|||||||||||||| ||| |||||| | | ||| | ||||||| | | ||| || ||||||||||||||||||||||| || ||||| || |
|
|
| T |
9166805 |
gcctcaacttcctttttctaacactatcgagtgggctcataatgagaacaaatttttctcgacaacaggattggtcattttcaactgtccagaattgagt |
9166706 |
T |
|
| Q |
368 |
gagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacc |
428 |
Q |
| |
|
|| | ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
9166705 |
gataaggaacattgcagtagcatgacattttcatggatgatgcaatttattcaggcaaacc |
9166645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 61 - 298
Target Start/End: Complemental strand, 33285878 - 33285641
Alignment:
| Q |
61 |
gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgcta |
160 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| || | || |||||||||||||| ||| |||| |
|
|
| T |
33285878 |
gttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggcta |
33285779 |
T |
|
| Q |
161 |
gaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgg |
260 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
33285778 |
gaaatattaaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttgg |
33285679 |
T |
|
| Q |
261 |
aatctttgcctcaacttccttcccctaccactattggg |
298 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33285678 |
aatctttgcctcaacttccttttcctaccaatattggg |
33285641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 157 - 437
Target Start/End: Original strand, 28870013 - 28870293
Alignment:
| Q |
157 |
gctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttg |
256 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
28870013 |
gctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgcaagttg |
28870112 |
T |
|
| Q |
257 |
ttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgtt |
356 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| |||| |||||||| ||||| | || ||||| |||| ||| |||||||||||||| |
|
|
| T |
28870113 |
tttgaatctttgcctcaacttccttctcctacccctatcgggcgggataattgtgagagcaaatatccctggagaacaggtttgatcattttcaactgtc |
28870212 |
T |
|
| Q |
357 |
caaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
|||| || ||||||||||||||||| | |||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
28870213 |
caaatttaggtgagagggaacgttgttgtagcatggcattttcatggatgaaacaattcattcgggcataccgacaatcct |
28870293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 337 - 424
Target Start/End: Complemental strand, 33285581 - 33285494
Alignment:
| Q |
337 |
attggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggca |
424 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
33285581 |
attggtcattttcaactgtccaaaattaggtgaaagggaacgttgcagtagcatggcattttcatggatgatacaattcatccaggca |
33285494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 428
Target Start/End: Complemental strand, 33271785 - 33271679
Alignment:
| Q |
328 |
gatttcaggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcag |
421 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
33271785 |
gattacaggattggtcattttcaactgtccaaaattggctgactgtgagagggaacgttgcagtagcttgacattttcatggatgatacaattcattatg |
33271686 |
T |
|
| Q |
422 |
gcaaacc |
428 |
Q |
| |
|
||||||| |
|
|
| T |
33271685 |
gcaaacc |
33271679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 433
Target Start/End: Complemental strand, 33409959 - 33409860
Alignment:
| Q |
334 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaa |
433 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
33409959 |
aggattgttcattttcaactgtccaaaattggttgagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattcaggcaaaccaacaa |
33409860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 33358849 - 33358797
Alignment:
| Q |
368 |
gagagggaacgttgcaggagcatgacattttcatggatgatacaattcattca |
420 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |||||||||||| |
|
|
| T |
33358849 |
gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattca |
33358797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 28869951 - 28870014
Alignment:
| Q |
61 |
gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagc |
124 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| | ||||| |||||| ||||| ||||||| |
|
|
| T |
28869951 |
gttgccatccttgaatagcttatattgtttgtgtaacgttgacgttagcttttgccatctaagc |
28870014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33272250 - 33272197
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaa |
54 |
Q |
| |
|
|||| |||||||| ||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
33272250 |
tctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaa |
33272197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33410409 - 33410356
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaa |
54 |
Q |
| |
|
||||||||||||| |||||||| || || |||| |||||||||||||||||||| |
|
|
| T |
33410409 |
tcttagctctcttgaagatctatatatgtgtggctgttccaaagtgtttaacaa |
33410356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31562449 - 31562497
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgttt |
49 |
Q |
| |
|
||||||||||||| ||||||||||| || |||| ||||||||||||||| |
|
|
| T |
31562449 |
tcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgttt |
31562497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33304930 - 33304880
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaa |
51 |
Q |
| |
|
||||||||||||| ||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
33304930 |
tcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtttaa |
33304880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28869825 - 28869878
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaa |
54 |
Q |
| |
|
||||| ||||||| ||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
28869825 |
tcttaactctcttgaagatctaaatatgtctggctgttccaaagtgtttaacaa |
28869878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33058009 - 33057956
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaa |
54 |
Q |
| |
|
|||||||||||||||| | |||||| || |||| ||||||||||| |||||||| |
|
|
| T |
33058009 |
tcttagctctcttcaatacctaaatatgtgtggctgttccaaagtatttaacaa |
33057956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33388516 - 33388467
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgttta |
50 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
33388516 |
tcttagctctcttgaagatctaaatatatgtggttgttccaaagcgttta |
33388467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33399401 - 33399348
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaa |
54 |
Q |
| |
|
||||||||||||| || |||||||| || ||| |||||||||||||||||||| |
|
|
| T |
33399401 |
tcttagctctcttgaatatctaaatatgaatggctgttccaaagtgtttaacaa |
33399348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9167219 - 9167171
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgttt |
49 |
Q |
| |
|
||||||||||||| ||||||||||| || |||| ||||||||| ||||| |
|
|
| T |
9167219 |
tcttagctctcttaaagatctaaatatgtgtggctgttccaaattgttt |
9167171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33359166 - 33359118
Alignment:
| Q |
1 |
tcttagctctcttcaagatctaaatttgggtggttgttccaaagtgttt |
49 |
Q |
| |
|
||||||||||||| |||||| |||| || | |||||||||||||||||| |
|
|
| T |
33359166 |
tcttagctctcttgaagatcaaaatatgtgcggttgttccaaagtgttt |
33359118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 80 - 437
Target Start/End: Complemental strand, 888 - 528
Alignment:
| Q |
80 |
ttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaaatttagggg |
179 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
888 |
ttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggg |
789 |
T |
|
| Q |
180 |
gaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttcc |
279 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
788 |
gaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcc |
689 |
T |
|
| Q |
280 |
ttcccctaccactattgggcgggaacgagatgagaatgacg---atgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaa |
376 |
Q |
| |
|
|| || | ||||||||||| ||| ||||||| ||| || |||| | |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
688 |
ttttccaagcactattgggccggattatcatgagaacaacgaatattattggactaaaggattggtcattttcaactgtccaaaattgggtgagagggaa |
589 |
T |
|
| Q |
377 |
cgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
|||| || ||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
588 |
tgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcct |
528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 80 - 437
Target Start/End: Complemental strand, 6634 - 6274
Alignment:
| Q |
80 |
ttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaaatttagggg |
179 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6634 |
ttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggg |
6535 |
T |
|
| Q |
180 |
gaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttcc |
279 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
6534 |
gaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcc |
6435 |
T |
|
| Q |
280 |
ttcccctaccactattgggcgggaacgagatgagaatgacg---atgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaa |
376 |
Q |
| |
|
|| || | ||||||||||| ||| ||||||| ||| || |||| | |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6434 |
ttttccaagcactattgggccggattatcatgagaacaacgaatattattggactaaaggattggtcattttcaactgtccaaaattgggtgagagggaa |
6335 |
T |
|
| Q |
377 |
cgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
|||| || ||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
6334 |
tgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcct |
6274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 71 - 428
Target Start/End: Original strand, 17440638 - 17440995
Alignment:
| Q |
71 |
ttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgctagaaagattaa |
170 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||||||||||||| || || ||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
17440638 |
ttgcatagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaa |
17440737 |
T |
|
| Q |
171 |
atttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcc |
270 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
17440738 |
atttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaatttgcagcattgcaagttgttggaatctttgcc |
17440837 |
T |
|
| Q |
271 |
tcaacttccttcccctaccactattgggcgggaacgagatgagaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggtgag |
370 |
Q |
| |
|
||||||||||| |||||| |||| ||||||||||||| |||| | || | || | |||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
17440838 |
tcaacttccttttcctaccgctatcgggcgggaacgagttgagggcggatattaccggcctacaggattgttcatcttcaactgtccaaaattgggtgag |
17440937 |
T |
|
| Q |
371 |
agggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacc |
428 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
17440938 |
agggaatgttacagtagcatgacattttcatggatgatgcaattcattaaggcaaacc |
17440995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 31157421 - 31157257
Alignment:
| Q |
117 |
gtctaagccatgttcctgattcaattgaatgtttacattcg-ctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagc |
215 |
Q |
| |
|
|||||||| || | |||||| |||||| |||| ||| |||| ||||||||||||||| ||||||| ||| ||||||||||||| |||||||||||| ||| |
|
|
| T |
31157421 |
gtctaagctatctccctgatgcaattggatgtctac-ttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagc |
31157323 |
T |
|
| Q |
216 |
tttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttcctt |
281 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||| | ||||||||||||||||||||||||| |
|
|
| T |
31157322 |
tttccaaacttgtatatttaaacttggagcattgcaagcttttggaatctttgcctcaacttcctt |
31157257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 281
Target Start/End: Original strand, 31498873 - 31499016
Alignment:
| Q |
138 |
caattgaatgtttacattcgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaa |
237 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||||||||||||||||| | ||||||||| |||||||||||||| | |||||||||||||||| |||||| |
|
|
| T |
31498873 |
caattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctttccaaacttgtatgtttaaa |
31498972 |
T |
|
| Q |
238 |
tttggaacactgcaagttgttggaatctttgcctcaacttcctt |
281 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
31498973 |
cttagaacattgcaaattgttggaatctttgcctcaacttcctt |
31499016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 31479029 - 31479129
Alignment:
| Q |
334 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaa |
433 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31479029 |
aggattgttcattttcaactgtcctaaattgggtgaaacggaacgttggagtagcatgacattttcatggatgatacaattcattcaggcaaaccgacaa |
31479128 |
T |
|
| Q |
434 |
t |
434 |
Q |
| |
|
| |
|
|
| T |
31479129 |
t |
31479129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 138 - 281
Target Start/End: Complemental strand, 31148486 - 31148343
Alignment:
| Q |
138 |
caattgaatgtttacattcgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaa |
237 |
Q |
| |
|
|||||| | |||||| || |||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
31148486 |
caattggacgtttacgttggctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatatttaaa |
31148387 |
T |
|
| Q |
238 |
tttggaacactgcaagttgttggaatctttgcctcaacttcctt |
281 |
Q |
| |
|
||| | || || ||||||||| |||| |||||||||||||||| |
|
|
| T |
31148386 |
cttgcagcattgtaagttgttgaaatcgttgcctcaacttcctt |
31148343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 31504032 - 31504153
Alignment:
| Q |
167 |
ttaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctt |
266 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
31504032 |
ttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaaactgttggaatctt |
31504131 |
T |
|
| Q |
267 |
tgcctcaacttccttcccctac |
288 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
31504132 |
tgcctgttcttccttctcctac |
31504153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 31478846 - 31478968
Alignment:
| Q |
166 |
attaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatct |
265 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||| |||||||||||||||| || || || |||||| ||||| ||||| |
|
|
| T |
31478846 |
attaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatatttaagcttagagcattgcaagctgttgaaatct |
31478945 |
T |
|
| Q |
266 |
ttgcctcaacttccttcccctac |
288 |
Q |
| |
|
|||||| ||||||||| ||||| |
|
|
| T |
31478946 |
ttgcctgtacttccttctcctac |
31478968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 31157213 - 31157122
Alignment:
| Q |
334 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaa |
425 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| ||||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
31157213 |
aggattggtcattttcaactgtcctaaattgggtgagagtgaagattgcaatagcatggcattttcatggatgatacaattgattcaggcaa |
31157122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 31472567 - 31472674
Alignment:
| Q |
333 |
caggattggtcattttcaactgttcaaaattgggtgagagggaac---gttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacct |
429 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
31472567 |
caggattgctcattttcaactgtcctaatttgggtgagagggaacattgttgcactaacatgacattttcatggatgatacaactcattcaggcaaatcc |
31472666 |
T |
|
| Q |
430 |
acaatcct |
437 |
Q |
| |
|
|||||||| |
|
|
| T |
31472667 |
acaatcct |
31472674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 31148268 - 31148172
Alignment:
| Q |
341 |
gtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||| | ||||||| ||||||||||||||||||| |||||| ||| |||| |||||||| |
|
|
| T |
31148268 |
gtcattttcaactgtcctaaattgggtgagagggaatgttggaatagcatgatattttcatggatgatacaactcattcgggcgaacccacaatcct |
31148172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 31504224 - 31504317
Alignment:
| Q |
344 |
attttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct |
437 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||| | | || || |||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
31504224 |
attttcaactgtcctaaattggatgagagggaatgctacattagaatgacattttcatggatgatacaattcattaaggcaaacccacaatcct |
31504317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 31472390 - 31472507
Alignment:
| Q |
165 |
gattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatc |
264 |
Q |
| |
|
|||||||| |||| || || ||||||||||| ||||||||| |||| ||||||||||||||||||||||||| || ||||| || | |||| |||| |
|
|
| T |
31472390 |
gattaaatgtaggagggaataattttgtgacagtacctagcccgagggagctttccaaacttgtatatttaaacttagaacatcgcccgcagttgaaatc |
31472489 |
T |
|
| Q |
265 |
tttgcctcaacttccttc |
282 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
31472490 |
tttgcctaaacttccttc |
31472507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 31526569 - 31526532
Alignment:
| Q |
159 |
tagaaagattaaatttagggggaaactattttgtgaca |
196 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31526569 |
tagaaagattaaatttagggggaaacaattttgtgaca |
31526532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 31017691 - 31017634
Alignment:
| Q |
178 |
gggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatattta |
235 |
Q |
| |
|
||||||| |||||||||| || ||||| || ||| ||||||| ||||||||||||||| |
|
|
| T |
31017691 |
gggaaacaattttgtgactctgcctagtctcagggagctttctaaacttgtatattta |
31017634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 6785236 - 6785354
Alignment:
| Q |
162 |
aaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgga |
261 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||||||| | ||||||||||||| ||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
6785236 |
aaagattaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttggatcactgcaagttgttgaa |
6785335 |
T |
|
| Q |
262 |
atctttgcctcaacttcct |
280 |
Q |
| |
|
|| ||||||| | |||||| |
|
|
| T |
6785336 |
atatttgcctgatcttcct |
6785354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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