View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16233_low_6 (Length: 351)

Name: NF16233_low_6
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16233_low_6
NF16233_low_6
[»] chr2 (2 HSPs)
chr2 (43-351)||(30972578-30972892)
chr2 (15-47)||(30714270-30714302)
[»] chr8 (1 HSPs)
chr8 (43-261)||(15257526-15257752)
[»] chr4 (2 HSPs)
chr4 (43-258)||(8912886-8913111)
chr4 (126-259)||(11488681-11488815)
[»] chr3 (4 HSPs)
chr3 (103-261)||(16217534-16217692)
chr3 (43-169)||(32202113-32202246)
chr3 (210-253)||(32202247-32202290)
chr3 (43-84)||(16217466-16217507)
[»] chr7 (3 HSPs)
chr7 (43-259)||(16300474-16300699)
chr7 (43-226)||(16253820-16254011)
chr7 (43-217)||(40504646-40504826)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 43 - 351
Target Start/End: Complemental strand, 30972892 - 30972578
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatagct--------cgctcagagctctagctggttcaaatcatatttagtctttgagataca 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||        |||||||||||||||||||||||||||||||||||| |  ||||||||    
T  30972892 taaaacattactgcgatttacagagctataacttaggtatagctgcatgtgtcgctcagagctctagctggttcaaatcatatttagtat--gagataca 30972795  T
Q  135 caacgctatatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaactatgtgatccatagagctatatctcccataacc 234  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  30972794 caacgctatatcttgatatagctactttgtctcacaggattttagccgtttattagtttctcgcaactatgtgatccatagagctatatctctcataacc 30972695  T
Q  235 ggcttcaaggcgaaccaaatggtctattaggagatgttcattccaccatcgtgttaagctacatgatggcatcataattaagggcacgatcacggtactt 334  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  30972694 ggcttcaaggcaaaccaaatggtctattaggagatgttcactccaccatcgtgttgagctacatgatggcatcataattaagggcacgatcacggtacat 30972595  T
Q  335 aacatgcacaatttgta 351  Q
    |||| ||||||||||||    
T  30972594 aacacgcacaatttgta 30972578  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 30714302 - 30714270
Alignment:
Q  15 catagggggcgaaaagtgcactttaccctaaaa 47  Q
    ||||||||||||||||||||||||| |||||||    
T  30714302 catagggggcgaaaagtgcactttagcctaaaa 30714270  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 261
Target Start/End: Original strand, 15257526 - 15257752
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatagct--------cgctcagagctctagctggttcaaatcatatttagtctttgagataca 134  Q
    |||||||||||| ||||||||| |||||||  | ||||||||||        ||||||||||| |||| ||||| || ||| |||||||| | |||||||    
T  15257526 taaaacattactccgatttacaaagctataaataaggtatagctgtctgtgtcgctcagagctatagccggttcgaagcatctttagtctctaagataca 15257625  T
Q  135 caacgctatatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaactatgtgatccatagagctatatctcccataacc 234  Q
    |||| ||||||| |||||| |||||| ||||||||| || |  | |||||||||||||||| |||||| |||||||||||||| |||||||  |||||||    
T  15257626 caacactatatcctgatatggctactatgtctcacaaggctacatccgtttattagcttcttgcaactttgtgatccatagagttatatctttcataacc 15257725  T
Q  235 ggcttcaaggcgaaccaaatggtctat 261  Q
     |||| | |||||||||||||||||||    
T  15257726 agctttatggcgaaccaaatggtctat 15257752  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 258
Target Start/End: Complemental strand, 8913111 - 8912886
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatagc--------tcgctcagagctctagctggttcaaatcatatttagtctttgagataca 134  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||||||| |||| |||| ||||||||  || |||||||| ||||||||     
T  8913111 taaaacattactgcgatttacagagctatagcttaggtatagtagcatgtgtcgctcaaagctatagccggttcaaagaatctttagtctctgagatacc 8913012  T
Q  135 caacgcta--tatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaactatgtgatccatagagctatatctcccataa 232  Q
    ||||  ||  |||||||||| | |||   ||| ||| |||| || |||| |||||||| |||  |||||| ||||||||||||||||||| ||  |||||    
T  8913011 caacaatacatatcttgatacaactataatgtgtcatagggctgcagccatttattagtttcaagcaactctgtgatccatagagctatacctttcataa 8912912  T
Q  233 ccggcttcaaggcgaaccaaatggtc 258  Q
    ||||||| | ||||||||||||||||    
T  8912911 ccggcttgatggcgaaccaaatggtc 8912886  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 11488681 - 11488815
Alignment:
Q  126 tgagatacacaacgctatatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaactatgtgatccatagagctatatct 225  Q
    |||||||||||  |||||||| | ||||||||  | || ||||||  | || | |||||||||||||||||||||||||||||| ||||||| |||||||    
T  11488681 tgagatacacatagctatatccttatatagcttttatgcctcacaaagctgcaaccgtttattagcttctcgcaactatgtgattcatagaggtatatct 11488780  T
Q  226 c-ccataaccggcttcaaggcgaaccaaatggtct 259  Q
    | | |||| |||||||| | |||||| | ||||||    
T  11488781 ctcaataatcggcttcatgtcgaacctattggtct 11488815  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 16217534 - 16217692
Alignment:
Q  103 tggttcaaatcatatttagtctttgagatacacaacgctatatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaact 202  Q
    ||||||||| ||| |||||||| ||||||||||| ||  ||||| ||||| | ||||| |||||||||||| || | |||||||||||||||||||||||    
T  16217534 tggttcaaagcatctttagtctctgagatacacatcgacatatcatgatacaactactatgtctcacagggatgcaaccgtttattagcttctcgcaact 16217633  T
Q  203 atgtgatccatagagctatatctcccataaccggcttcaaggcgaaccaaatggtctat 261  Q
     | | |||||| ||| | |||||| || ||||| ||| | || ||||||||||||||||    
T  16217634 ctctaatccatcgagttgtatctctcaaaaccgactttatggtgaaccaaatggtctat 16217692  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 32202113 - 32202246
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatagctc--------gctcagagctctagctggttcaaatcatatttagtctttgagataca 134  Q
    ||||||||||||||||||||||||| | |||||||| |||||||         |||||||| | || | |||||||| ||| |||||||| ||||||||     
T  32202113 taaaacattactgcgatttacagagttgtagcttagatatagctgcatgtgtagctcagag-tataaccggttcaaaacatctttagtctctgagatacc 32202211  T
Q  135 caacgctatatcttgatatagctactttgtctcac 169  Q
    |||||||||||| ||||||| ||||| ||||||||    
T  32202212 caacgctatatcctgatataactactatgtctcac 32202246  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 32202247 - 32202290
Alignment:
Q  210 ccatagagctatatctcccataaccggcttcaaggcgaaccaaa 253  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||    
T  32202247 ccatatagctatatctctcataaccggctttaaggcgaaccaaa 32202290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 16217466 - 16217507
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatag 84  Q
    ||||||||||| ||| |||||||||||||| |||||||||||    
T  16217466 taaaacattacagcggtttacagagctataacttaggtatag 16217507  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 43 - 259
Target Start/End: Original strand, 16300474 - 16300699
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatagct--------cgctcagagctctagctggttcaaatcatatttagtctttgagataca 134  Q
    |||||||||||||||||||||| ||||||| |||||||||||||        | || |||||| ||||  | ||||| ||| ||||||||||||||||||    
T  16300474 taaaacattactgcgatttacatagctataacttaggtatagcttcaagtgtctcttagagctatagccagctcaaagcatctttagtctttgagataca 16300573  T
Q  135 caacgctatatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaactatgtgatccatagagctatatctc-ccataac 233  Q
    ||  |||| ||| | ||||||||    |||||||||||| |  |  |||||||||||  ||||||||| ||||||||||||||||||||||| | |||||    
T  16300574 catggctacatccttatatagctttaatgtctcacagggctacaatcgtttattagccgctcgcaactctgtgatccatagagctatatctctcaataac 16300673  T
Q  234 cggcttcaaggcgaaccaaatggtct 259  Q
    | |||||   ||||||||| ||||||    
T  16300674 ctgcttcctagcgaaccaattggtct 16300699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 226
Target Start/End: Complemental strand, 16254011 - 16253820
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatagc--------tcgctcagagctctagctggttcaaatcatatttagtctttgagataca 134  Q
    |||||||||||||||||||||| ||||||| |||||||||| |        || || |||||| |||| |||||||| || ||||||||| || ||||||    
T  16254011 taaaacattactgcgatttacatagctataacttaggtataacttcaagtgtctcttagagctatagccggttcaaagcaaatttagtctctgcgataca 16253912  T
Q  135 caacgctatatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaactatgtgatccatagagctatatctc 226  Q
    ||  |||||||| | |||||||| |  | |||||||||  |  | | |||||||||   ||||||||| |||||||||||||||||||||||    
T  16253911 cagggctatatccttatatagcttcaatatctcacaggactacaactgtttattagtcgctcgcaactctgtgatccatagagctatatctc 16253820  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 217
Target Start/End: Original strand, 40504646 - 40504826
Alignment:
Q  43 taaaacattactgcgatttacagagctatagcttaggtatagc--------tcgctcagagctctagctggttcaaatcatatttagtctttgagataca 134  Q
    ||||||||||||||||||||||||||||||  | ||||||| |        |||||||||| | ||||||| ||||| ||| |||||||| |||||||||    
T  40504646 taaaacattactgcgatttacagagctataattaaggtataacttcccgtgtcgctcagagttatagctgg-tcaaagcatgtttagtctctgagataca 40504744  T
Q  135 caacgctatatcttgatatagctactttgtctcacagggttgtagccgtttattagcttctcgcaactatgtgatccatagag 217  Q
    ||  | | |||  | |||||||| || || ||||||| | || |||||||||||||||||||| |||| |||| | |||||||    
T  40504745 catggttgtattcttatatagcttctatg-ctcacagagctgcagccgtttattagcttctcgtaactttgtggttcatagag 40504826  T

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