View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16233_low_9 (Length: 288)

Name: NF16233_low_9
Description: NF16233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16233_low_9
NF16233_low_9
[»] scaffold0070 (2 HSPs)
scaffold0070 (11-269)||(16025-16283)
scaffold0070 (13-201)||(49548-49736)
[»] chr8 (16 HSPs)
chr8 (13-269)||(25323477-25323733)
chr8 (13-269)||(25696181-25696437)
chr8 (13-269)||(25311820-25312076)
chr8 (13-269)||(25341801-25342057)
chr8 (13-269)||(22899793-22900049)
chr8 (13-269)||(25453803-25454059)
chr8 (13-269)||(25605458-25605714)
chr8 (24-269)||(25716014-25716259)
chr8 (13-185)||(25476566-25476738)
chr8 (13-269)||(25570704-25570960)
chr8 (65-269)||(25801099-25801303)
chr8 (29-269)||(23259010-23259250)
chr8 (13-189)||(24874447-24874623)
chr8 (84-269)||(25686471-25686656)
chr8 (13-51)||(25392331-25392369)
chr8 (239-269)||(25647833-25647863)
[»] scaffold0830 (1 HSPs)
scaffold0830 (13-269)||(3516-3772)
[»] chr4 (1 HSPs)
chr4 (13-269)||(10324665-10324921)
[»] scaffold1415 (1 HSPs)
scaffold1415 (13-118)||(8-113)
[»] chr2 (3 HSPs)
chr2 (34-189)||(5101177-5101332)
chr2 (22-167)||(5080676-5080821)
chr2 (22-167)||(5118724-5118869)
[»] chr3 (1 HSPs)
chr3 (20-167)||(16885435-16885582)
[»] chr6 (1 HSPs)
chr6 (19-127)||(14413021-14413129)


Alignment Details
Target: scaffold0070 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 16025 - 16283
Alignment:
Q  11 agaatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16025 agaatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatataatagattacaaggagagattcctga 16124  T
Q  111 tggtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaactt 210  Q
    |||||||| ||||||||| |||||| || |||| ||| | |||||||  ||||||||||||||||||| ||| |||||| || | |||  || | || ||    
T  16125 tggtggacatttcaaaaacttcacagctcaatcatttattcataatggtgcactttgcggcaatcctctcctccaagtacctaaatgtcgtaagcaagtt 16224  T
Q  211 aagaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||||  |||||||  ||| |||||  |||| ||||||||||||||||||||||||||    
T  16225 aagaaatggtcaatggaaaaaaagcttatattgaaatgcatacttcccatagttgtgtc 16283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 49548 - 49736
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  49548 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacattaacttctcatataatagattaaaaggagagattcctgatg 49647  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgtt 201  Q
    |||||||||| ||||||||||   | ||||| ||    ||||||| ||| ||||| |||||||| ||||||||  || |||||||||||    
T  49648 gtggacctttaaaaaatttcatggccgaatctttcactcataatggagccctttgtggcaatccccgcctacatatacctcagtgtgtt 49736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 25323733 - 25323477
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  25323733 aatatgttaacaggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatataatagattacaaggagagattcctgatg 25323634  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    |||||| |||||||||||||||| || |||| ||| | ||||||||||||||||||||  |||||||||| |||||| ||   |||| || | || ||||    
T  25323633 gtggacatttcaaaaatttcacagctcaatcatttatgcataatgaagcactttgcggtgatcctcgccttcaagtacctacatgtggtaagcaagttaa 25323534  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||  ||| |||  ||| |||||  |||| ||||||||||||||||||||||||||    
T  25323533 gaaatggtccatggaaaaaaagcttatattgaaatgcatacttcccatagttgtgtc 25323477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 25696437 - 25696181
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  25696437 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatataatagattacaaggagagattcctgatg 25696338  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    ||||||  ||||||||||||||| || |||| ||| | |||||||| |||||||||||  |||||||||| |||||| ||   |||| || | || ||||    
T  25696337 gtggacggttcaaaaatttcacagctcaatcatttatgcataatgatgcactttgcggtgatcctcgccttcaagtacctacatgtggtaagcaagttaa 25696238  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||  |||||||  ||| |||||  |||| ||||||||||||||||||||||||||    
T  25696237 gaaatggtcaatggaaaaaaagcttatattgaaatgcatacttcccatagttgtgtc 25696181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 25312076 - 25311820
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |||    
T  25312076 aatatgttaactggtgttattccaaaatccttagaatcacttttgtaccttcaaaacatcaacttctcatataatagattacaaggagagattcctaatg 25311977  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    |||||| |||||||||||||||| || |||| ||| | ||||||||||||||||||||  |||||| ||| |||||| ||   |||| || | || ||||    
T  25311976 gtggacatttcaaaaatttcacagctcaatcatttatgcataatgaagcactttgcggtgatcctcaccttcaagtacctacatgtggtaagcaagttaa 25311877  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||  |||||||  ||| |||||  |||| ||||||||||||||||||||||||||    
T  25311876 gaaatggtcaatggaaaaaaagcttatattgaaatgcatacttcccatagttgtgtc 25311820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 25342057 - 25341801
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |||    
T  25342057 aatatgttaactggtgttattccaaaatccttagaatcacttttgtaccttcaaaacatcaacttctcatataatagattacaaggagagattcctaatg 25341958  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    |||||| |||||||||||||||| || |||| ||| | ||||||||||||||||||||  |||||| ||| |||||| ||   |||| || | || ||||    
T  25341957 gtggacatttcaaaaatttcacagctcaatcatttatgcataatgaagcactttgcggtgatcctcaccttcaagtacctacatgtggtaagcaagttaa 25341858  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||  |||||||  ||| |||||  |||| ||||||||||||||||||||||||||    
T  25341857 gaaatggtcaatggaaaaaaagcttatattgaaatgcatacttcccatagttgtgtc 25341801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 22899793 - 22900049
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| || |||| ||||||| | |||||||||||||||||||    
T  22899793 aatatgataactggtgttattccaaaatccttagcatcgcttttgtatcttcgaaacatcaatttatcatataatagactacaaggagagattcctgatg 22899892  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    ||||||||||||||||||||||| ||||||| | | | ||||||||||||||||| ||| ||||||||||||||||  ||| ||||| ||   ||  |||    
T  22899893 gtggacctttcaaaaatttcacagctgaatcatatttgcataatgaagcactttgtggcgatcctcgcctacaagtccctctgtgtgataaacaagctaa 22899992  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
     |||| |||||||| |||||| |||||| |||||||||||||||||||| |||||||    
T  22899993 aaaaatgtcaatgaaaaagaatctattactcaaatgcatacttcccatacttgtgtc 22900049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 25454059 - 25453803
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||    
T  25454059 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatataatagattacaaggagagaatcctaatg 25453960  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    ||||||  ||||||||||||||| || |||| ||| | |||||||| |||||||||||| |||||||||| |  ||| ||   |||| || | || ||||    
T  25453959 gtggacaattcaaaaatttcacagctcaatcatttatgcataatgatgcactttgcggcgatcctcgcctccttgtacctacatgtggtaagcaagttaa 25453860  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||  |||||||  ||| || ||  |||| |||||||||||| |||||||||||||    
T  25453859 gaaatggtcaatggaaaaaaaacttatattgaaatgcatactttccatagttgtgtc 25453803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 25605714 - 25605458
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||    
T  25605714 aatatgttaactggtgttattccaaaatccttagaatcacttgtgtatctccaaaacatcaacttctcatataatagattacaaggagagattcctaatg 25605615  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
     ||||| |||||||||||||||| || |||| ||| | |||||||| |||||||||||  |||||| | | |||||| ||   |||  || | || ||||    
T  25605614 atggacatttcaaaaatttcacagctcaatcatttatgcataatgatgcactttgcggagatcctcacttccaagtacctacatgtagtaagcaagttaa 25605515  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||  |||||||  ||| |||||  |||| |||| |||||||||||||||||||||    
T  25605514 gaaatggtcaatggaaaaaaagcttatattgaaatacatacttcccatagttgtgtc 25605458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 25716259 - 25716014
Alignment:
Q  24 tggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggacctttc 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  25716259 tggtgttattccaaaatccttagaatcacttttgtaccttcaaaacatcaacttctcatataatagattacaaggagagattcctgatggtggacatttc 25716160  T
Q  124 aaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaagaaaaagtcaa 223  Q
    ||||| |||||| || |||| ||  | |||||||| |||||||||||  ||||||| ||   |||| |||  |||| || | || |||| |||  |||||    
T  25716159 aaaaacttcacagctcaatcattcatgcataatgatgcactttgcggtgatcctcgactcatagtacctccatgtgataagcaagttaaaaaatggtcaa 25716060  T
Q  224 tgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||  ||| |||||  |||| |||||||||||||| |||||||||||    
T  25716059 tggaaaaaaagcttatattgaaatgcatacttcctatagttgtgtc 25716014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 25476738 - 25476566
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  25476738 aatatgctaaccggtattattccaaaatccttagaatcacttttgtatcttgaaaacatcaacttctcatataatagattacaaggagagattcctgatg 25476639  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctaca 185  Q
    |||| |||||||||||||| |   ||||||| ||| | || |||| ||| |||||||| ||||||||||||||    
T  25476638 gtgggcctttcaaaaattttatggctgaatcttttattcacaatggagctctttgcggaaatcctcgcctaca 25476566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 25570960 - 25570704
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||| || |||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||    
T  25570960 aatatgctagctggtgttattccaaagtcattagaatcacttttgtaccttcagaacatcaacttctcatataatagattacaaggagagattcctgatg 25570861  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    ||||||||||||| || | ||||||| |||| ||| | ||||||| | ||||||| || |||  |||||| |||||| | |  |||| ||   ||  |||    
T  25570860 gtggacctttcaagaactgcacaactcaatcttttatgcataatggaccactttgtggaaatattcgcctccaagtaccaccttgtggtaaacaagataa 25570761  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
     |||| ||||||| |  ||||| ||||| ||||||||||||||||||||||||||||    
T  25570760 caaaatgtcaatggcggagaagatattactcaaatgcatacttcccatagttgtgtc 25570704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 65 - 269
Target Start/End: Complemental strand, 25801303 - 25801099
Alignment:
Q  65 aaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcact 164  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||| ||| | ||||||||||||||    
T  25801303 aaaacatcaacttctcatataatagattacaaggagagattcctgatggtggacatttcaaaaatttcacagctcaatcatttatgcataatgaagcact 25801204  T
Q  165 ttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaagaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagtt 264  Q
    ||||||| |||||||||| |||||| ||   |||| || | || |||| |||  |||||||  ||| |||||  ||||||||||||||||||||||||||    
T  25801203 ttgcggcgatcctcgccttcaagtacctacatgtggtaagcaagttaaaaaatggtcaatggaaaaaaagcttatattcaaatgcatacttcccatagtt 25801104  T
Q  265 gtgtc 269  Q
    |||||    
T  25801103 gtgtc 25801099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 23259250 - 23259010
Alignment:
Q  29 ttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggacctttcaaaaa 128  Q
    ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | ||||||||| |||||||||||||||||||| |||||||| |  ||    
T  23259250 ttattccaaaatcattagaatcacttttgtaccttcaaaacattaacttatcgtataatagattacaaggagagattcctgatggcggaccttttaggaa 23259151  T
Q  129 tttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaagaaaaagtcaatgaca 228  Q
    ||||||| || |||| ||| | ||||||| || |||||| || |||| |||| | |||||||| |  |||  ||   |   |||||||| ||||||| ||    
T  23259150 tttcacagctcaatcttttatgcataatggagaactttgtggaaatcttcgcttccaagtatcgctttgtcgtaaacatgataagaaaatgtcaatggca 23259051  T
Q  229 aagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    |||||| ||||| ||||||||||| ||||||||||||||||    
T  23259050 aagaagatattactcaaatgcataattcccatagttgtgtc 23259010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 24874447 - 24874623
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||| |||| |||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  24874447 aatatgctaacaggtgctgttcccaaatccttagaatcacttgtgtatcttcaaaacatcaacttctcatataatagattacaaggagagattcctgatg 24874546  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagta 189  Q
    ||||||||||||| || | |||| ||  ||| ||| | |||| || | ||||||| || |||| |||||||||||||    
T  24874547 gtggacctttcaagaactgcacagctatatcttttatgcatagtggaccactttgtggaaatcttcgcctacaagta 24874623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 269
Target Start/End: Complemental strand, 25686656 - 25686471
Alignment:
Q  84 taatagattgcaaggagagattcctgatggtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgccta 183  Q
    ||||||||| ||||||||||||  |||||||||||||||||| | ||||||| || |||| ||| | ||||||||||||||||||||| ||||| ||||     
T  25686656 taatagattacaaggagagattgttgatggtggacctttcaagagtttcacatctcaatcttttatgcataatgaagcactttgcggcgatccttgcctt 25686557  T
Q  184 caagtatctcagtgtgttatgaaacttaagaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    |||||| ||   |||| || | ||||||| |||  ||||||   ||| |||||  |||| ||||||||||||||||||||| ||||    
T  25686556 caagtacctacatgtggtaagcaacttaaaaaatggtcaatcgaaaaaaagcttatattgaaatgcatacttcccatagttttgtc 25686471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 25392369 - 25392331
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatca 51  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25392369 aatatgttaactggtgttattccaaaatccttagaatca 25392331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 269
Target Start/End: Complemental strand, 25647863 - 25647833
Alignment:
Q  239 tattcaaatgcatacttcccatagttgtgtc 269  Q
    |||||||||||||||||||||||||||||||    
T  25647863 tattcaaatgcatacttcccatagttgtgtc 25647833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 3516 - 3772
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||    
T  3516 aatatgctaactggtgttattccaaaatccttagaatcacttttgtaccttcaaaacatcaacttctcatacaatagattgcaaggagagattccttatg 3615  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    ||||| ||||| ||||||| ||| || | || ||| | ||||||  |||||||||||| ||||| ||||| |||||| | |  |||| ||   ||  | |    
T  3616 gtggagctttccaaaatttgacagctcattcttttatgcataatttagcactttgcggaaatccccgcctccaagtaccaccttgtggtaaacaagatca 3715  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||| |||||||||||||||| || || |||||| |||||||||||||||||||||    
T  3716 gaaaatgtcaatgacaaagaagataatactcaaattcatacttcccatagttgtgtc 3772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 10324921 - 10324665
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  10324921 aatatgttaactagtgttattccaaaatccttagaatcacttttgtatcttgaaaacatcaacttatcatataatagattagaaggagagattcctgatg 10324822  T
Q  113 gtggacctttcaaaaatttcacaactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagtatctcagtgtgttatgaaacttaa 212  Q
    ||||| ||||||| || |||||| || |||| ||| | || |||| || ||| ||||| ||||||||||| |||||| | |  ||||  |   ||  |||    
T  10324821 gtggatctttcaagaaattcacagctcaatcttttttgcacaatggagtactctgcggaaatcctcgcctccaagtaccaccctgtgggaaagaagataa 10324722  T
Q  213 gaaaaagtcaatgacaaagaagctattattcaaatgcatacttcccatagttgtgtc 269  Q
    ||||| ||||||| |||||| | || || | ||||||||||||||||||||||||||    
T  10324721 gaaaatgtcaatggcaaagatgataatactgaaatgcatacttcccatagttgtgtc 10324665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1415 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 113 - 8
Alignment:
Q  13 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||    
T  113 aatatgttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatataatagattacaaggagagattcctaatg 14  T
Q  113 gtggac 118  Q
    ||||||    
T  13 gtggac 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 5101177 - 5101332
Alignment:
Q  34 ccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggacctttcaaaaatttca 133  Q
    |||||||||||||| |||||||  |||||| || |||| ||||| ||||  |||||||||||||||||||||||| |||| |||||||||||||| ||||    
T  5101177 ccaaaatccttagagtcactttcttatcttaaatacattaacttttcatacaatagattgcaaggagagattcctaatggaggacctttcaaaaaattca 5101276  T
Q  134 caactgaatcctttgtacataatgaagcactttgcggcaatcctcgcctacaagta 189  Q
    || || |||| ||  | ||||||||||||||||| |||| | ||| | ||||||||    
T  5101277 catctcaatctttcatgcataatgaagcactttgtggcagttctcacttacaagta 5101332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 5080821 - 5080676
Alignment:
Q  22 actggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggacctt 121  Q
    |||||||| || |||||||||||||| |||||||  |||||| || |||| ||||| ||||  |||||||||||||||||||||||| |||| || || |    
T  5080821 actggtgtgatcccaaaatccttagagtcactttcttatcttaaatacattaacttttcatacaatagattgcaaggagagattcctaatggagggccat 5080722  T
Q  122 tcaaaaatttcacaactgaatcctttgtacataatgaagcactttg 167  Q
    ||||||| ||||||  |||||| ||  |  ||||||||||||||||    
T  5080721 tcaaaaaattcacatttgaatctttcatgaataatgaagcactttg 5080676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 5118724 - 5118869
Alignment:
Q  22 actggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggacctt 121  Q
    |||||||| || |||||||||||||| |||||||  |||||| || || | ||||| ||||  |||||||||||||||||||||||| |||| || || |    
T  5118724 actggtgtgatcccaaaatccttagagtcactttcttatcttaaatacgttaacttttcatacaatagattgcaaggagagattcctaatggagggccat 5118823  T
Q  122 tcaaaaatttcacaactgaatcctttgtacataatgaagcactttg 167  Q
    ||||||| ||||||  |||||| ||  |  ||||||||||||||||    
T  5118824 tcaaaaaattcacatttgaatctttcatgaataatgaagcactttg 5118869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 16885435 - 16885582
Alignment:
Q  20 taactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggacc 119  Q
    |||||||||| |||||| |||||||||  |||||||  |||||| |  |||| || || ||||  ||||||||||||||||||||||||||||| |||||    
T  16885435 taactggtgtgattccagaatccttagtgtcactttcttatcttaagtacatgaatttgtcatacaatagattgcaaggagagattcctgatggaggacc 16885534  T
Q  120 tttcaaaaatttcacaactgaatcctttgtacataatgaagcactttg 167  Q
    |||||| || || ||| || |||| ||  | |||||||||||||||||    
T  16885535 tttcaacaaatttacagctcaatctttcatgcataatgaagcactttg 16885582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 14413129 - 14413021
Alignment:
Q  19 ttaactggtgttattccaaaatccttagaatcacttttgtatcttcaaaacatcaacttctcatgtaatagattgcaaggagagattcctgatggtggac 118  Q
    ||||| ||||| || ||||||||||||||   |||||   ||||| || |||| || || ||||  |||| |||||||||||||||||||||||| ||||    
T  14413129 ttaaccggtgtgatcccaaaatccttagagctactttctgatcttaaatacataaatttgtcatacaatatattgcaaggagagattcctgatggaggac 14413030  T
Q  119 ctttcaaaa 127  Q
    |||||||||    
T  14413029 ctttcaaaa 14413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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