View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16234_low_1 (Length: 560)
Name: NF16234_low_1
Description: NF16234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16234_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 358 - 534
Target Start/End: Complemental strand, 40586550 - 40586373
Alignment:
| Q |
358 |
gtgacagtgtcttaaattcttcatcacttctggactatcttcctccagcttcatgcatggttttttattt-caaggaggaagcttttcctttgactctca |
456 |
Q |
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| T |
40586550 |
gtgacagtgtcttcaattgttcatcacttctggactatcttcctccagcttcatgcatggttttttattttcaaggaggaagcttttcctttgactctca |
40586451 |
T |
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| Q |
457 |
ctttatctggtttttgatttgatattctaccaatcttttgcttcaaaggtttccttttcaacctaccaagttaatcac |
534 |
Q |
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| T |
40586450 |
ctttatctggtttttgatttgatattctaccaatcttttgcttcaaaggtttccttttcaacctaccaagttaatcac |
40586373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 40586893 - 40586715
Alignment:
| Q |
18 |
atcaaatttagctagcatcaaaacttaaacctatnnnnnnnncaaaatgtttactctcataatattggaacaccatttgctagaaaagaaaatgaaggtg |
117 |
Q |
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| T |
40586893 |
atcaaatttagctagcatcaaaacttaaacctataaaaaaa-caaaatgtttactctcataatattggaacaccatttgctagaaaagaaaatgaaggtg |
40586795 |
T |
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| Q |
118 |
aaaaatagttgcgtttctttcacatagcatatatagcatctctttagtccatttctttttagtgtacatccactcatatc |
197 |
Q |
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| T |
40586794 |
aaaaatagttgcgtttctttcacatagcatatatagcatctctttagtccatttctttttagtgtacatccactcatatc |
40586715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 40586668 - 40586624
Alignment:
| Q |
244 |
agcaactactaacaaagttgttacttgccattgtacaagtaacat |
288 |
Q |
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| T |
40586668 |
agcaactactaacaaagttgttacttgccattgtacaagtaacat |
40586624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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