View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16234_low_3 (Length: 357)
Name: NF16234_low_3
Description: NF16234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16234_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 23812096 - 23812430
Alignment:
| Q |
7 |
agaagaacttgaccatccatgtgatatttcgcatcggcagcatcagctggatccacaaattgaacaaacccaaaaccccttggctccctggaacataaga |
106 |
Q |
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| T |
23812096 |
agaagaacttgaccatccatgtgatatttcgcatcggcagcatcagctggatccacaaattgaacaaacccaaaaccccttggctccctggaacataaga |
23812195 |
T |
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| Q |
107 |
tccaaatgcatccagagacaggatatggcatatcaaataaacacacctgcatactgaagtagtgtgggttgcaaatattcattattcaaaaatatgatcg |
206 |
Q |
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| T |
23812196 |
tccaaatgcatcaagagacaggatatggcatatcaaataaacacacctgcatactgaagtagtgtgggttgcaaatattcattattcaaaaatatgatcg |
23812295 |
T |
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| Q |
207 |
catctctggacaatcacaagtcagactctcaactctccacagaatacattataaacaccacacaattctaaccttgtagaagccaaaatattgagatgaa |
306 |
Q |
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| T |
23812296 |
cttctctggacaatcacaagtcagactctcaactctccacagaatacattataaacaccacacaattctaaccttgtagaagccaaaatattgagatgaa |
23812395 |
T |
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| Q |
307 |
aatcttcaatacttgaacttcaagacttgaacttc |
341 |
Q |
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| T |
23812396 |
aatcttcaatacttgaacttcaagacttgaacttc |
23812430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 37716072 - 37716149
Alignment:
| Q |
6 |
gagaagaacttgaccatccatgtgatatttcgcatcggcagcatcagctggatccacaaattgaacaaacccaaaacc |
83 |
Q |
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||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||| ||| |||||||| |
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| T |
37716072 |
gagaagaacttgaccatccatatgatatttagcatcagcagcatccgcaggatccacaaattgaataaaaccaaaacc |
37716149 |
T |
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