View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16234_low_4 (Length: 332)
Name: NF16234_low_4
Description: NF16234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16234_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 18967360 - 18967668
Alignment:
| Q |
16 |
gtaatcactgtaatgactttatctagatcatcgatcttctacaagttatgtgtttaaatgactttatcttggtttgtgaccacaaattttttatatggca |
115 |
Q |
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| T |
18967360 |
gtaatcactgtaatgactttatctagatcatcgatcttctacaagttatgtgtttaaatgagtttatcttggtttgtgaccacaaattttttatatggca |
18967459 |
T |
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| Q |
116 |
ttgtggtagtaaatattgtaa--gttttatatgcagtttttaaatgcagcgattattaacggttaattgatttcctctaatgagtgtatacttctcatta |
213 |
Q |
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| T |
18967460 |
ttgtggtagtaaaaattgtaactgttttatatgcagtttttaattgcagcgagtattaacggttaattgatttcctctaatgagtgtatacttctcatta |
18967559 |
T |
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| Q |
214 |
attggatttgctaaaaacatagcagaattactgatgaaatctaatctacaatctctgctaaaaaatgtctaaaaacactttcatagtattcccttaaaag |
313 |
Q |
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| T |
18967560 |
attggatttgctaaaaacatagcagaaataccgatgaaatctaatctacaatctctgcttaaaaatgtctaaaaacactttcatagtattcccttaaaag |
18967659 |
T |
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| Q |
314 |
attaatatt |
322 |
Q |
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||||||||| |
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| T |
18967660 |
attaatatt |
18967668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 18949446 - 18949312
Alignment:
| Q |
82 |
tcttggtttgtgaccacaaattttttatatggcattgtggtagtaaatattgtaagt--tttatatgcagtttttaaatgcagcgattattaacggttaa |
179 |
Q |
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| T |
18949446 |
tcttggtttgtgaccacag-ttttttatatggcatcgtggtagtaaaaattgtaactattttatatgcagtttttaattggagcgagtattaacggataa |
18949348 |
T |
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| Q |
180 |
ttgatttcctctaatgagtgtatacttctcattaat |
215 |
Q |
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| T |
18949347 |
ttgatttcctccaaagagtgcatacttctcattaat |
18949312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 18949258 - 18949172
Alignment:
| Q |
233 |
tagcagaattactgatgaaatctaatctacaatctctgctaaaaaatgtctaaaaacactttcatagtattcccttaaaagattaat |
319 |
Q |
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| T |
18949258 |
tagcagaattgccgatgaaatctaatctacaatgtctgcttgtaaatgtctaaaaacactttcatagtattccctttaaagagtaat |
18949172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 18950241 - 18950181
Alignment:
| Q |
16 |
gtaatcactgtaatgactttatctagatcatcgatcttctacaagttatgtgtttaaatga |
76 |
Q |
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| T |
18950241 |
gtaatcactgtaatggctttatctagatcaccgatgttctacaagttatgtgtttaaatga |
18950181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 18984176 - 18984312
Alignment:
| Q |
82 |
tcttggtttgtgaccacaaa-ttttttatatggcattgtggtagtaaatattgtaa--gttttatatgcagtttttaaatgcagcgattattaacggtta |
178 |
Q |
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| T |
18984176 |
tcttggtttatgaccacaaagttttttatatcgcatcttggtcataaaaattgtaactgttttatatgcagttttttactggagtgattattaacgttta |
18984275 |
T |
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| Q |
179 |
attgatttcctctaatgagtgtatacttctcattaat |
215 |
Q |
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| T |
18984276 |
acagatttccttcaatgagtgtataattcacattaat |
18984312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 16244755 - 16244666
Alignment:
| Q |
233 |
tagcagaattactgatgaaatctaatctacaatctctgctaaaaaatgtctaaaaacactttcatagtattcccttaaaagattaatatt |
322 |
Q |
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| T |
16244755 |
tagcagaattgccgatgaaatctaatcaacaaattctgcttaataatgtctaaacacactttcatagttttccttttaaagtgtaatatt |
16244666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 19004773 - 19004883
Alignment:
| Q |
103 |
tttttatatggcattgtggtagtaaatattgtaagtttt--atatgcagtttttaaatgcagcgattattaacggttaattgatttcctctaatgagtgt |
200 |
Q |
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| T |
19004773 |
tttttatatggtatcttggtcataaaaattgtaactttttaatatgtagtttttaattggagtaagtattaacggttaatagatttccttcaatgagtgt |
19004872 |
T |
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| Q |
201 |
atacttctcat |
211 |
Q |
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| T |
19004873 |
atacttctcat |
19004883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 18991876 - 18991950
Alignment:
| Q |
137 |
gttttatatgcagtttttaaatgcagcgattattaacggttaattgatttcctctaatgagtgtatacttctcat |
211 |
Q |
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| T |
18991876 |
gttttatatgtagtttttaattggactgagtattaacggttaatagatttccttcaatgagtttatacttctcat |
18991950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 18992005 - 18992080
Alignment:
| Q |
233 |
tagcagaattactgatgaaatctaatctacaatctctgctaaaaaatgtctaaaaacactttcatagtattccctt |
308 |
Q |
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| T |
18992005 |
tagcagaattgccggtgaaatctaatcaacaaattctgcttaataatgtctaaactcactttcatagttttccctt |
18992080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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