View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16234_low_6 (Length: 296)
Name: NF16234_low_6
Description: NF16234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16234_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 41900850 - 41900561
Alignment:
| Q |
19 |
aaggataatgcttttggtgtaccagcaattacaacatctcatcctgattggggtttttactcgcgtgttcatcgcagtattgaataaaacattgatcagt |
118 |
Q |
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| T |
41900850 |
aaggataatgcttttggtgtaccagcaattacaacatctcatcctgattggggtttttactcgcgatttcgtcgcagtattgaataaaacattgatcagt |
41900751 |
T |
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| Q |
119 |
ggacattaatgaaagacagtggcttggtttccttgcgtgttgctggaattgggtgataacttttgttctaaagaaatttattttgaaatttatgtttgag |
218 |
Q |
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| T |
41900750 |
ggacattaatgaaagacagtggcttggtttccttgcttgttgctggaattgggtgataacttttgttctaaagaaatttattttgaaatttatgtttgag |
41900651 |
T |
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| Q |
219 |
caacttattttgcaaaa------------cataatggatcaaatgctgatcttgttttgttttaattttcgttgttgtgaaatgacttat |
296 |
Q |
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| T |
41900650 |
caacttattttgcaaaacctccagggttgcataatggatgaaatgctgatcttgttttgttttaattttcgttgttgtgaaatgacttat |
41900561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 41890878 - 41890828
Alignment:
| Q |
21 |
ggataatgcttttggtgtaccagcaattacaacatctcatcctgattgggg |
71 |
Q |
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| T |
41890878 |
ggataatgcttttggtgtaccagcaattacaacttctcatcctcattgggg |
41890828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 41895776 - 41895710
Alignment:
| Q |
22 |
gataatgcttttggtgtaccagcaattacaacatctcatcctgattggggtttttactcgcgtgttc |
88 |
Q |
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| T |
41895776 |
gataatgctattggtgaaccagcaattacaacatctcatcctgattgggccttttattctcgtgttc |
41895710 |
T |
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