View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16234_low_7 (Length: 278)
Name: NF16234_low_7
Description: NF16234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16234_low_7 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 4265800 - 4266054
Alignment:
| Q |
18 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4265800 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaa |
4265899 |
T |
|
| Q |
118 |
cttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4265900 |
cttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatg |
4265999 |
T |
|
| Q |
218 |
ccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttctctc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4266000 |
ccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttctc |
4266054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 4471299 - 4471048
Alignment:
| Q |
18 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaa |
117 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| | ||| |||||||| | ||||||| || |||||||||| || | || | | ||||||||||||| | |
|
|
| T |
4471299 |
actttaactttgagaccattccaaatggttttactgcaatggaaag---tggtgatcttattcaagacatacactccttttttcgatcaatcatgacgga |
4471203 |
T |
|
| Q |
118 |
cttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatg |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||||||| || |||| |||| || ||| |||||||| | |||| |||||||||||| |
|
|
| T |
4471202 |
cttccttcaaccctttggtgaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatg |
4471103 |
T |
|
| Q |
218 |
ccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttctctc |
272 |
Q |
| |
|
|| |||||| |||||||||| ||||||| ||||||||||||| || |||| |||| |
|
|
| T |
4471102 |
ccatttacagtagatgctgctgaagaacgtgcactcccaatcgttctcttttctc |
4471048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4575840 - 4575600
Alignment:
| Q |
18 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaa |
117 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||||| ||| || |||||||||| | ||||||| || || |||||| |||||||||| ||||| |
|
|
| T |
4575840 |
actttaactttgagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctcttggtgaatcaatcataacgaa |
4575741 |
T |
|
| Q |
118 |
cttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatg |
217 |
Q |
| |
|
||| | || |||||||||||||||| ||| |||||| | ||||||| || |||| |||| || ||| | |||||||| ||||| ||||| |||||| |
|
|
| T |
4575740 |
ctttcgccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatg |
4575641 |
T |
|
| Q |
218 |
ccttttacaatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
|| |||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
4575640 |
ccatttacagtagatgctgctgaagaacatgccctcccaat |
4575600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 4623692 - 4623440
Alignment:
| Q |
18 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaa |
117 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||| ||||||||||| ||||||||| || |||||||||| | ||||| | ||||| | || ||| |
|
|
| T |
4623692 |
actttaactttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttctgattcaataaggaagaa |
4623593 |
T |
|
| Q |
118 |
cttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatg |
217 |
Q |
| |
|
||| ||| |||||| |||||||||| | | ||||||| | ||||||| || |||| || |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
4623592 |
tttctatcatcccttttgtgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatg |
4623493 |
T |
|
| Q |
218 |
ccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttctc |
270 |
Q |
| |
|
| ||||||||| | ||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
4623492 |
tcatttacaatacaagctgctgaagagcatgcactcccaattgttttcttctc |
4623440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 4562047 - 4561809
Alignment:
| Q |
18 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaa |
117 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||||| ||| || |||||||| || ||||||| || || |||||| |||||||||| ||||| |
|
|
| T |
4562047 |
actttaactttgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctcttggtgaatcaatcataacgaa |
4561948 |
T |
|
| Q |
118 |
cttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatg |
217 |
Q |
| |
|
||| | || |||||||||||||||| ||| |||||| | ||||||| || |||| |||| || ||| | |||||||| ||||| ||||| |||||| |
|
|
| T |
4561947 |
ctttcaccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatg |
4561848 |
T |
|
| Q |
218 |
ccttttacaatagatgctgcggaagaacatgcactccca |
256 |
Q |
| |
|
|| |||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
4561847 |
ccatttacagtagctgctgctgaagaacatgcactccca |
4561809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 4482242 - 4482010
Alignment:
| Q |
26 |
tttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttc |
125 |
Q |
| |
|
||||| || |||||||||||| |||||||||| ||||| ||| ||| | | ||||||| ||| | ||||| |||||||||||||||||||| | | |
|
|
| T |
4482242 |
tttgaaacgataccagatggtttaactccaattgaaggtgatgatgaagtaagtcaagacttattctctcttactcaatcaatcatgacgaactttcgcc |
4482143 |
T |
|
| Q |
126 |
aaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttac |
225 |
Q |
| |
|
| |||||||||| |||| ||| ||||||| ||||||||| || |||| |||| || ||| | |||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
4482142 |
acttctttgatgaatttctggctaaacttcatgaatctgccactgctggtattatccccccagtcacttgcttagtttctgattgctacatgccatttac |
4482043 |
T |
|
| Q |
226 |
aatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
| |||||||||| |||||||||||||||||||| |
|
|
| T |
4482042 |
agtagatgctgccgaagaacatgcactcccaat |
4482010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 4298239 - 4298481
Alignment:
| Q |
16 |
caactttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacg |
115 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| ||||||| |||||| |||| |||| ||||||||||||| ||||| |||||||||| | | |
|
|
| T |
4298239 |
caactttagctttgagactattccagatggtctgactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaag |
4298338 |
T |
|
| Q |
116 |
aacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttaca |
215 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||| ||||| | | ||||||| || |||| || | |||||| |||||||||| ||| | |||| || | |
|
|
| T |
4298339 |
aacttccttcagccctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaa |
4298438 |
T |
|
| Q |
216 |
tgccttttacaatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
|| | ||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
4298439 |
tgtcatttaccatacaagctgcggaagaacatgcactcccaat |
4298481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 4627527 - 4627295
Alignment:
| Q |
26 |
tttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttc |
125 |
Q |
| |
|
||||||||||||||||||||| |||| ||| | ||||| |||| |||| ||||||||||||| ||||| |||||||| | | ||||||||||| |
|
|
| T |
4627527 |
tttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttccttc |
4627428 |
T |
|
| Q |
126 |
aaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttac |
225 |
Q |
| |
|
| ||||||| |||||||||| ||| ||||||| | || |||| || |||| || || ||||| |||||||||| ||||| ||||||| ||| | ||||| |
|
|
| T |
4627427 |
agccctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttac |
4627328 |
T |
|
| Q |
226 |
aatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
||| | ||||| |||||||||||||||||||| |
|
|
| T |
4627327 |
catacaagctgctgaagaacatgcactcccaat |
4627295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 272
Target Start/End: Original strand, 4258927 - 4259173
Alignment:
| Q |
26 |
tttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttc |
125 |
Q |
| |
|
|||||||| || | ||||||||| |||||| ||||||| |||| |||| |||||||||| || | | ||| ||||| || | | ||||||||||| |
|
|
| T |
4258927 |
tttgagactattcaagatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttctcaatctataagaaagaacttccttc |
4259026 |
T |
|
| Q |
126 |
aaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttac |
225 |
Q |
| |
|
| ||||||| |||||||||| ||| |||||| | || |||| | |||| || ||||||| |||||||||| ||||| |||||||||||| | |||| |
|
|
| T |
4259027 |
agccctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttag |
4259126 |
T |
|
| Q |
226 |
aatagatgctgcggaagaacatgcactcccaatccttttcttctctc |
272 |
Q |
| |
|
||| | ||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
4259127 |
tatacaagctgctgaagagcatgcactcccaattgttttcttctctc |
4259173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 3173386 - 3173148
Alignment:
| Q |
20 |
tttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaact |
119 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||| |||||||||| ||||||||| || ||||||| || | ||||| | ||||||||| | ||||| |
|
|
| T |
3173386 |
tttaactttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagacttacgcgctctttgtcgatcaatcatcaagaact |
3173287 |
T |
|
| Q |
120 |
tccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgcc |
219 |
Q |
| |
|
| | || ||| ||||||| || ||| |||||| | ||||| | || |||| |||| || ||| |||||||||| ||||||||||| || ||||| |
|
|
| T |
3173286 |
ttcatcgcttttttcgtgaactttttgctaaacttcacgattctgcaactgctggtcttatacctccagttacttgctttgtttccgattgctatatgcc |
3173187 |
T |
|
| Q |
220 |
ttttacaatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
|||||| |||||| ||| ||||||||||| |||||||| |
|
|
| T |
3173186 |
atttacagtagatgttgctgaagaacatgctctcccaat |
3173148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 4462512 - 4462354
Alignment:
| Q |
101 |
caatcaatcatgacgaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttgg |
200 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||||||||||| |||||| || ||||||| || | | |||| || || |||||||| | | |
|
|
| T |
4462512 |
caatcaatcatgatgaacttcattcaaccctttagtgaacttcttacaagacttgatgcctctgccactgccgatcttatccctccggttacttgcatag |
4462413 |
T |
|
| Q |
201 |
tttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaatc |
259 |
Q |
| |
|
|||| |||||||||||||| |||||| | ||||| || ||| ||| ||||||||||||| |
|
|
| T |
4462412 |
tttctgattgttacatgccatttacagtggatgccgctgaacaacgtgcactcccaatc |
4462354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 4594387 - 4594259
Alignment:
| Q |
26 |
tttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttc |
125 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||| || |||||||||| | |||||| ||||| || | | ||| |||||| |
|
|
| T |
4594387 |
tttgaaaccataccagatggtctaacaccaatggaaggtgatggtgatgttagtcaagacataccctctcttgctcaatctataagaaagaatttcctta |
4594288 |
T |
|
| Q |
126 |
aaccctttgatgaacttcttactagactt |
154 |
Q |
| |
|
|||||||| |||||||||||| |||||| |
|
|
| T |
4594287 |
aacccttttgtgaacttcttacaagactt |
4594259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 258
Target Start/End: Original strand, 4503044 - 4503276
Alignment:
| Q |
26 |
tttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttc |
125 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| ||||||||| || ||||||| || | |||| | |||||||| || ||| || | | |
|
|
| T |
4503044 |
tttgagaccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagacttacgcgctctctatctatcaatcaagaagaattttcacc |
4503143 |
T |
|
| Q |
126 |
aaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttac |
225 |
Q |
| |
|
|| ||||| |||| ||||| || |||| || | ||||||| || |||| |||| || ||| |||||||||| ||||| ||||| ||||||| ||| | |
|
|
| T |
4503144 |
aattctttggtgaatttcttgttaaacttaatgactctgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgccatttcc |
4503243 |
T |
|
| Q |
226 |
aatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
| || ||||||| ||||||||| |||||||||| |
|
|
| T |
4503244 |
agtatatgctgctgaagaacatacactcccaat |
4503276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 4581391 - 4581250
Alignment:
| Q |
26 |
tttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctct-tgtgcaatcaatcatgacgaacttcctt |
124 |
Q |
| |
|
|||||||| || ||||||||| ||||||| || |||||| || |||||| || |||||||||||| |||| |||| ||||||||| | ||||||||| |
|
|
| T |
4581391 |
tttgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtg-aatcaatcagaaagaacttccta |
4581293 |
T |
|
| Q |
125 |
caaccctttgatgaacttcttactagacttcatcaatctgcca |
167 |
Q |
| |
|
||||| ||| |||||||||| |||||||| || | ||||||| |
|
|
| T |
4581292 |
caacctttttgtgaacttcttgctagacttaatgactctgcca |
4581250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 4255544 - 4255622
Alignment:
| Q |
180 |
ttccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
|||||| | |||||||||| ||||| |||||||||||| | ||||| ||| | ||||| ||||| |||||||||||||| |
|
|
| T |
4255544 |
ttccactagttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaat |
4255622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 4489094 - 4489180
Alignment:
| Q |
172 |
tggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
|||| |||| || ||| |||||||||| ||||| ||||| | ||| | |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
4489094 |
tggtcttatccctccagttacttgcttagtttctgattgcaatatggcatttacagtagatgctgctgaagaacatgcactcccaat |
4489180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 4618686 - 4618620
Alignment:
| Q |
18 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaaga |
84 |
Q |
| |
|
||||||| ||||||| ||| ||||||||| |||| ||||||||||| ||||||||| || |||||| |
|
|
| T |
4618686 |
actttaactttgagagcattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaaga |
4618620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 24104480 - 24104222
Alignment:
| Q |
18 |
actttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24104480 |
actttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaa |
24104381 |
T |
|
| Q |
118 |
cttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatg |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
24104380 |
cttccttcagccctttgatgaacttcttactagacttcatcaatctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatg |
24104281 |
T |
|
| Q |
218 |
ccttttaca----atagatgctgcggaagaacatgcactcccaatccttttcttctctc |
272 |
Q |
| |
|
|| |||||| || ||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
24104280 |
ccatttacagttgatcgatgctgttgaagaacatgcactcccaattcttttcttttctc |
24104222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 3088122 - 3087881
Alignment:
| Q |
26 |
tttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttc |
125 |
Q |
| |
|
|||||||| || | |||||||||||||||||||||||| |||||||||| || ||||||| | ||||| |||||| | | ||||||| ||| |
|
|
| T |
3088122 |
tttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttcattc |
3088023 |
T |
|
| Q |
126 |
aaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttac |
225 |
Q |
| |
|
||||||||| |||||||||| | || ||||| | |||||| ||| |||| ||||||||||| |||||||||| || | |||| ||||||||| ||||| |
|
|
| T |
3088022 |
aaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttac |
3087923 |
T |
|
| Q |
226 |
aatagatgctgcggaagaacatgcactcccaatccttttctt |
267 |
Q |
| |
|
||| | | ||| ||||| ||||||||||||||||| |||| |
|
|
| T |
3087922 |
catacaagttgctgaagagaatgcactcccaatccttctctt |
3087881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 258
Target Start/End: Original strand, 3313 - 3505
Alignment:
| Q |
66 |
atggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgc |
165 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| ||||| || | ||||| ||| |||| ||||| ||||||||||| || ||||||| | ||||| |
|
|
| T |
3313 |
atggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgc |
3412 |
T |
|
| Q |
166 |
caatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaat |
258 |
Q |
| |
|
|| || |||| || |||||| | |||||||| | || | |||||||||||||| ||||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
3413 |
cactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctgctgaagaacatgcactcccaat |
3505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 2316 - 2441
Alignment:
| Q |
137 |
gaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctg |
236 |
Q |
| |
|
||||||||| |||||||| | | ||||||||| |||| |||| || ||| | ||| |||| ||||| |||||||||||| | ||||| ||| | |||| |
|
|
| T |
2316 |
gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctg |
2415 |
T |
|
| Q |
237 |
cggaagaacatgcactcccaatcctt |
262 |
Q |
| |
|
| |||||| ||||||||||||||||| |
|
|
| T |
2416 |
ctgaagaatatgcactcccaatcctt |
2441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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