View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16234_low_9 (Length: 217)
Name: NF16234_low_9
Description: NF16234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16234_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 9236473 - 9236283
Alignment:
| Q |
11 |
cagagaacaaggaagcttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatag |
110 |
Q |
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| T |
9236473 |
cagagaacaaggaagtttttctcggtagggaaaagttgcaacgaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatag |
9236374 |
T |
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| Q |
111 |
aatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcccaaaataaccgactttggacttgctaaattgtgt |
201 |
Q |
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| T |
9236373 |
aatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcccaaaataaccgactttggacttgctaaattgtgt |
9236283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 9377762 - 9377950
Alignment:
| Q |
13 |
gagaacaaggaagcttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaa |
112 |
Q |
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| T |
9377762 |
gagaacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaa |
9377861 |
T |
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| Q |
113 |
tacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcccaaaataaccgactttggacttgctaaattgtgt |
201 |
Q |
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| T |
9377862 |
tacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgt |
9377950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 8927028 - 8927156
Alignment:
| Q |
46 |
ttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgt |
145 |
Q |
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| T |
8927028 |
ttgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcactttgatatcaatccccacaatgtct |
8927127 |
T |
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| Q |
146 |
taatagatgataatttgagtcccaaaata |
174 |
Q |
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| T |
8927128 |
tgttagatgacaatttcattccaaaaata |
8927156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 8939454 - 8939569
Alignment:
| Q |
46 |
ttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgt |
145 |
Q |
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| T |
8939454 |
ttgcaacaaattgctcttggcattgccaatgggattgagtatcttcaccaaggctgtgatcatagaattcttcacttcgatatcaatccacataatgtat |
8939553 |
T |
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| Q |
146 |
taatagatgataattt |
161 |
Q |
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| T |
8939554 |
tattagatgacaattt |
8939569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 9466794 - 9466628
Alignment:
| Q |
16 |
aacaaggaagcttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatac |
115 |
Q |
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||||| || |||||||| || ||||| | | |||||||||||||||| || | || | || |||||||||||||| ||||||||||| ||||| | |
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| T |
9466794 |
aacaaagatgcttttcttggatgggacacgctgcaacaaattgctctaggcatagccaatggaattgagtatcttcaccaaggttgtgatcaaagaattc |
9466695 |
T |
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| Q |
116 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcccaaaataaccgactt |
182 |
Q |
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| T |
9466694 |
ttcactttgacatcaatcctcataatgtcttgttagatgagaatttcactcccaaaattacagactt |
9466628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 9337606 - 9337742
Alignment:
| Q |
37 |
tgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccac |
136 |
Q |
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||||| ||||||||| |||||||||| || | |||| || ||||||||||| || ||||||||||| ||||| || |||||||| |||||||| | |
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| T |
9337606 |
tgggataagttgcaaaaaattgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctc |
9337705 |
T |
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| Q |
137 |
acaatgtgttaatagatgataatttgagtcccaaaat |
173 |
Q |
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| T |
9337706 |
ataatgtcttgttagatgacaatttcactcccaaaat |
9337742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 9364465 - 9364601
Alignment:
| Q |
37 |
tgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccac |
136 |
Q |
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||||| ||||||||| |||||||||| || | |||| || ||||||||||| || ||||||||||| ||||| || |||||||| |||||||| | |
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| T |
9364465 |
tgggataagttgcaaaaaattgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctc |
9364564 |
T |
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| Q |
137 |
acaatgtgttaatagatgataatttgagtcccaaaat |
173 |
Q |
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| T |
9364565 |
ataatgtcttgttagatgacaatttcactcccaaaat |
9364601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 9420735 - 9420607
Alignment:
| Q |
27 |
ttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgat |
126 |
Q |
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||||||||| ||||| ||| | ||||||||||||||||| | || | ||| |||||||||||||| || |||||||||| ||| |||||||| ||| |
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| T |
9420735 |
ttttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgat |
9420636 |
T |
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| Q |
127 |
atcaatccacacaatgtgttaatagatga |
155 |
Q |
| |
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| T |
9420635 |
attaatccctataacgtgttattagatga |
9420607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 9437818 - 9437690
Alignment:
| Q |
27 |
ttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgat |
126 |
Q |
| |
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||||||||| ||||| ||| | ||||||||||||||||| | || | ||| |||||||||||||| || |||||||||| ||| |||||||| ||| |
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| T |
9437818 |
ttttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgat |
9437719 |
T |
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| Q |
127 |
atcaatccacacaatgtgttaatagatga |
155 |
Q |
| |
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| T |
9437718 |
attaatccccataacgtgctattagatga |
9437690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 10992820 - 10992988
Alignment:
| Q |
34 |
ggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatc |
133 |
Q |
| |
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|||||| |||||||||| |||||||| | ||| | || | ||| |||||||||||||| ||||||||||| | || ||||| ||||||||||| | |
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| T |
10992820 |
ggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtgatcaacgcatccttcattttgatatcaaac |
10992919 |
T |
|
| Q |
134 |
cacacaatgtgttaatagatgataatttgagtcccaaaataaccgactttggacttgctaaattgtgtt |
202 |
Q |
| |
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|||| ||||||||| | || |||| || | ||| |||||| | |||||||| || |||||||| |||| |
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| T |
10992920 |
cacaaaatgtgttacttgaccataacttcattccaaaaatatctgactttggtctagctaaattatgtt |
10992988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 8962381 - 8962520
Alignment:
| Q |
46 |
ttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgt |
145 |
Q |
| |
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|||||||| |||||||| || |||| | || |||||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||||| | | |
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| T |
8962381 |
ttgcaacagattgctctaggcattgccaatggaattgagtatcttcaccagggctgtgatcaaagaattcttcattttgatatcaatccgcacaatatct |
8962480 |
T |
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| Q |
146 |
taatagatgataatttgagtcccaaaataaccgactttgg |
185 |
Q |
| |
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| ||||||| ||||| | ||| |||||| | |||||||| |
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| T |
8962481 |
tgttagatgacaattttactccaaaaatatcagactttgg |
8962520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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