View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_1 (Length: 1042)
Name: NF16235_high_1
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 67 - 912
Target Start/End: Original strand, 32902626 - 32903472
Alignment:
| Q |
67 |
tgcatttagctccagaaatagcacgtttacatacgaggagttggcgcgtgcagccgacggtttctctgatgctaacttcctaggacaagggggatttgga |
166 |
Q |
| |
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||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| ||||||||| |
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| T |
32902626 |
tgcatttagctccggaaaaagcacgtttacatatgaggagttggcgcgtgcaaccgacggtttctctgatgctaacctcctcggtcaaggtggatttgga |
32902725 |
T |
|
| Q |
167 |
tctgtacacaaaggtattctctctgatggtaaagaggttgctgttaagcagctgaaagctggtagtggacaaggagaacgcgaatttcaagctgaagttg |
266 |
Q |
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| ||| || | |||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32902726 |
tatgtgcatagaggtattctccctaatggtaaagaggttgctgttaagcagctgaaagctggtagcggacaaggagaacgcgaatttcaagctgaagttg |
32902825 |
T |
|
| Q |
267 |
ggattattagccgtgttcatcacagacatcttgtctctcttgttggatactgcagcactggttctcagaggctacttgcttatgagttcgttcctaacaa |
366 |
Q |
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||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| | |||||| || |||| ||| || || ||||||||||| |
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| T |
32902826 |
agattattagccgtgttcatcataaacatcttgtttctcttgttggatactgcagcactgggtttcagagacttcttgtttacgaatttgttcctaacaa |
32902925 |
T |
|
| Q |
367 |
tacattggaattccatttacatggtacatttttgtttttggtcactcttttgtgt---tgcacaatgcttttgctagaagcgttctttaattcttatggt |
463 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||||| ||| ||| | ||| | |||||||||||||||||||| ||||| ||||||| |||| |
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| T |
32902926 |
tactctggaattccatttacatggtacatttt-gtttttgctcattctgt-gtggcactacacaatgcttttgctagaagttttctt-aattcttttggt |
32903022 |
T |
|
| Q |
464 |
tatttttgaactgcaggacaaggacgaccaacaatggattggtcaacaagacggagaattgctttaggatccgcaaaaggactggcatatcttcatgaag |
563 |
Q |
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|
| T |
32903023 |
tatttctaaactgcaggaaaaggaagaccaacaatggattggtctacaagactgagaattgctttaggatctgctaaaggacttgcatatcttcatgaag |
32903122 |
T |
|
| Q |
564 |
attgtatgttctgcacttttgactgttatttgtt-cagccttagctagtttatgtcaaactgattgtttattgtaaatttctgtttgtgcaggtcatcct |
662 |
Q |
| |
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||||||||||||| || ||||||| | |||| || |||||| |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
32903123 |
attgtatgttctgtacctttgactatcatttttttcagcctcggctagtttatgtgaaaccgattgtttattgtaaatttctgtttgttcaggtcatcct |
32903222 |
T |
|
| Q |
663 |
aggatcattcaccgtgatattaaagctgctaacatccttcttgattttatgtttgaagcaaaggtatattttattacacgtcttccttgtggtagtgacg |
762 |
Q |
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| T |
32903223 |
aagatcattcaccgtgatattaaagctgctaacatacttctcgattttaagtttgaagcaaaggtatgttccattacgcatcttccctgtgatagtggtg |
32903322 |
T |
|
| Q |
763 |
atgcactgtttaaaaagttctaagaagttgtgaattttagtttaatttagtatcaaatttctgttgacaggttgcagattttggtcttgcaaagactgct |
862 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32903323 |
atgcactgtttaaaatgttctaataagttgtgaattttagtttaatttagtatcaaatttctgttgacaggttgctgattttggtcttgcaaagattgct |
32903422 |
T |
|
| Q |
863 |
tctgatctcaatagtcatgtttctactcgagtgatggggactttcgggta |
912 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
32903423 |
tctgatctcaacactcatgtttctactcgagtgatggggactttcgggta |
32903472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 128 - 586
Target Start/End: Original strand, 32869205 - 32869663
Alignment:
| Q |
128 |
ttctctgatgctaacttcctaggacaagggggatttggatctgtacacaaaggtattctctctgatggtaaagaggttgctgttaagcagctgaaagctg |
227 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
32869205 |
ttctctgatgctaactacctaggaaaagggggatttggatctgtacacaaaggtattctccctgatggtaaagagattgctgttaagcagctgaaagctg |
32869304 |
T |
|
| Q |
228 |
gtagtggacaaggagaacgcgaatttcaagctgaagttgggattattagccgtgttcatcacagacatcttgtctctcttgttggatactgcagcactgg |
327 |
Q |
| |
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||| | ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
32869305 |
atagcagtcaaggagaaagcgaatttaaagctgaagttgagattattagccgtgttcatcacaaacatcttgtctctcttgttggatactgcagcgctgg |
32869404 |
T |
|
| Q |
328 |
ttctcagaggctacttgcttatgagttcgttcctaacaatacattggaattccatttacatggtacatttttgtttttggtcactcttttgtgttgcaca |
427 |
Q |
| |
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|| | ||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32869405 |
ttatgagatgctacttgcttatgaatttgttcctaacaaaacattggaattccatttacatggtacatttttgtttttggtcactcttttgtgttgcaca |
32869504 |
T |
|
| Q |
428 |
atgcttttgctagaagcgttctttaattcttatggttatttttgaactgcaggacaaggacgaccaacaatggattggtcaacaagacggagaattgctt |
527 |
Q |
| |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | | | | | | ||||||||| |||||| ||||||| |
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|
| T |
32869505 |
atacttttgctagaagtgttctttaattcttatggttatttttgaactgcaggaaaagctcaaacgatacttgattggtcagcaagacaactaattgctg |
32869604 |
T |
|
| Q |
528 |
taggatccgcaaaaggactggcatatcttcatgaagattgtatgttctgcacttttgac |
586 |
Q |
| |
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||||||| || |||||||| | |||||||||||||||||||| |||||| ||||||||| |
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| T |
32869605 |
taggatctgcgaaaggacttgaatatcttcatgaagattgtaggttctgtacttttgac |
32869663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 617 - 912
Target Start/End: Original strand, 32869872 - 32870170
Alignment:
| Q |
617 |
tcaaactgattgtttattgtaaatttctgtttgtgcaggtcatcctaggatcattcaccgtgatattaaagctgctaacatccttcttgattttatgttt |
716 |
Q |
| |
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||||| ||||||||||||||| |||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
32869872 |
tcaaattgattgtttattgtatatttctctttgttcaggtaatcctaagatcattcaccgtgatattaaagctgctaacatccttctcgattctaagttt |
32869971 |
T |
|
| Q |
717 |
gaagcaaaggtatattttattacacgtcttccttgtggtagtgacgatgcactgtttaaaaagttctaa----gaagttgtgaattttagtttaatttag |
812 |
Q |
| |
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| T |
32869972 |
gaagcaaaggtatgttccattacacatctt-cttgtggcagtggtgatgcactgtttaaaatgttctaataattaagttgtgaatattagtttaatttag |
32870070 |
T |
|
| Q |
813 |
tatcaaatttctgttgacaggttgcagattttggtcttgcaaagactgcttctgatctcaatagtcatgtttctactcgagtgatggggactttcgggta |
912 |
Q |
| |
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|||| |||||||||||| ||||||| |||||||||||||||||| | | ||||| || | ||| |||||||||| ||||| ||||||||||||||| |
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| T |
32870071 |
tatcgaatttctgttgaaaggttgctgattttggtcttgcaaaggattcacctgattccagcactcacgtttctactcaagtgaaggggactttcgggta |
32870170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 33145813 - 33145719
Alignment:
| Q |
221 |
aaagctggtagtggacaaggagaacgcgaatttcaagctgaagttgggattattagccgtgttcatcacagacatcttgtctctcttgttggata |
315 |
Q |
| |
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||||| |||||||||||||| ||||| || ||||||||||| ||| || ||||| ||||||||||| | |||||||| || ||||||||||| |
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| T |
33145813 |
aaagcgggtagtggacaaggcgaacgtgagtttcaagctgagattgatatcattagtcgtgttcatcatcgtcatcttgtgtcgcttgttggata |
33145719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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