View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_10 (Length: 430)
Name: NF16235_high_10
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 25209521 - 25209105
Alignment:
| Q |
1 |
tttccatttatttattttgatgggttagatgaagtttaggtttgtgtgacatacatcatat------gtgtctatatatattgaagtatagtttgcaaca |
94 |
Q |
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|||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
25209521 |
tttctatttatttattttgatgggttagatgaaatataggtttgtgtgacatatatcatattcatatgtgtctatatatattgaagtatagtttacaaca |
25209422 |
T |
|
| Q |
95 |
ctttgtgatcttagaaagcttgatgaacaaaaatttcttagtaacttagatcattgtcaatatataatcatcattgtgctttttcttagtttaaaaaggt |
194 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
25209421 |
ctttgtgatcttagaaagcttgatgaacaaaaatttcttagtaacttagatcattgtcaatata--atcatcattgtgctttttctttgtttaaaaaggt |
25209324 |
T |
|
| Q |
195 |
attttaaatcgatccaaacttgttatttcaaagnnnnnnnnnnnnnnnaatgttgatttagttgctaacataaattatgttcttaaatttgatgcagtta |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
25209323 |
attttaaatcgatccaaacttgttatttcaaatatttttttttttttaaatgttgatttaggtgttaacataaattatgttcttaaatttgatgcagtta |
25209224 |
T |
|
| Q |
295 |
ggagttcaggaatgcagtggtcattttcaaataaggtttcaaaccttcctcaattcatgtcattcaagaataacactcatgaagataggtcaagaaacaa |
394 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25209223 |
ggagttcaggaatgcagtggtcattttcaaataaggtttcaaaccttcctcaattcatgtcattcaagaataacactcatgaagataggtcaagaaacaa |
25209124 |
T |
|
| Q |
395 |
tgttatggatccagtagct |
413 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
25209123 |
tgttatggatccagtagct |
25209105 |
T |
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