View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_13 (Length: 401)
Name: NF16235_high_13
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 7308796 - 7309182
Alignment:
| Q |
1 |
agaattcgaaaagaaaataataatataaaagagcatctaatcgtccaaaggaattcagatttccttattcggaaaaatctcgcaataaccatgtcattaa |
100 |
Q |
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| T |
7308796 |
agaattcgaaaagaaaataataatataaaagagcatctaatagtccaaaggaattcagatttccttattcggaaaaatctcgcaatcaccatgtcattaa |
7308895 |
T |
|
| Q |
101 |
ctatcggatcaagattgaacg-tgtagatttcaacgtcgagtcgagatgttggtgtttaaggaaatcaaataaaaactttgtttgaaatcttcattctta |
199 |
Q |
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| T |
7308896 |
ctatcggatcaagattgaacggtgtagatttcaacgtcgagtcgagatgtcagtgtttaaggaaatcaaataaaaactttgcttgaaatcttcattctta |
7308995 |
T |
|
| Q |
200 |
gatcttaatccaacagtcaccaacatatgagtccgtgaatgctggattttagcaacagaaaggaatccaaattctcctcc---taacctagcagccttat |
296 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
7308996 |
gatcttaatccaacagtcaccaacatatgagttcgtgaatgctggattttagcaacagaaagaaatccaaattctcctccttataacctagcagccttat |
7309095 |
T |
|
| Q |
297 |
gcttaatattaat-aaaatttaacacaaaaataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaaca |
382 |
Q |
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||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309096 |
gcttaatattaataaaaatttaacacacagataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaaca |
7309182 |
T |
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