View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_2 (Length: 749)
Name: NF16235_high_2
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 211 - 515
Target Start/End: Complemental strand, 37734381 - 37734077
Alignment:
| Q |
211 |
caacaagaattaattacctcaaaatcatgatccaaacgacgtcgtttcaaagaaatcgttgtaactaacttcgaaataacctcatcgtggttatcgttgc |
310 |
Q |
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| T |
37734381 |
caacaagaaataattacctcaaaatcatgatccaaacgacgtcgtttcaaagaaatcgttgtaactaacttcgaaataacctcatcgtggttatcgttgc |
37734282 |
T |
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| Q |
311 |
acttgctaaccgaaaccgactcatcgctaccggaggaactcgaagccggtggaggctgcgccgccgttgacgaccaaggtacaacctgattatcaccgtc |
410 |
Q |
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| T |
37734281 |
acttgctaaccgaaaccgactcatcgctaccggaggaactcgaagccggtggaggctgcgccgccgttgacgaccaaggtacaacctgattatcaccgtc |
37734182 |
T |
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| Q |
411 |
ctcatcaccatcaacatcctcatcatcctcatcggaatcgtaatccgtatcttcttcattgtcattgtcaccttcgctttcttcttgttgttcagcgctg |
510 |
Q |
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| T |
37734181 |
ctcatcaccatcaacatcatcatcatcctcatcggaatcgtaatccgtatcttcttcattgtcattgtcaccttcgctttcatcttgttgttcagcgctg |
37734082 |
T |
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| Q |
511 |
gtacc |
515 |
Q |
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||||| |
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| T |
37734081 |
gtacc |
37734077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 565 - 734
Target Start/End: Complemental strand, 37734045 - 37733876
Alignment:
| Q |
565 |
agttttcttccgcccgcgcatctatcacacaacgaaagcgcgttaccgagcctagcaccggaggctttccacggtgtcggagattgacaagcgtgacaga |
664 |
Q |
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| T |
37734045 |
agttttcttccgccggcgcatctatcacacaacgaaagcgcgttaccgagcctagcaccggaggctttccacggcgtgggagattgacaagcgtgacaga |
37733946 |
T |
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| Q |
665 |
ggagagttctcatgtgtctctcaaccaaaaagttagcagcgtggaccttagaatcgcagtcccagtataa |
734 |
Q |
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| T |
37733945 |
ggagagttctcatgtgtctctcaaccaaaaagttagcagcgtggaccttagaatcgcagtcccagcataa |
37733876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 37734575 - 37734452
Alignment:
| Q |
18 |
accgccgcatcgccgccttcgacgacggttccccgtcgcaccctatcaaatcaacctcatccacttctcttcgttgatttttccaatttttcgaatccga |
117 |
Q |
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| T |
37734575 |
accgccgcatcgccgccttcgacgacggttccccgtcgcaccctatcaaatcaacctcatccacctctcttcgttgatttttccaatttttcgaatccga |
37734476 |
T |
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| Q |
118 |
aacctgaataatcacagaatcaac |
141 |
Q |
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| T |
37734475 |
aacctgaataatcacagaatcaac |
37734452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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