View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_3 (Length: 740)
Name: NF16235_high_3
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 79 - 362
Target Start/End: Complemental strand, 3222081 - 3221787
Alignment:
| Q |
79 |
caagtgatgagtagacatgatgtgtgtgttgataggtggaacttgggagtttaaggtagctaggtagcaagtcaaaggagaggcaaacagacgaaaatga |
178 |
Q |
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| T |
3222081 |
caagtgatgagtagacatgatgtgtgtgttgataggtggaacttgggagtttaaggtag----gtagcaagtcaaaggagaggcaaacagacgaaaatga |
3221986 |
T |
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| Q |
179 |
catctctaaagattcccactaatggatgaatggcatatttcgaactacttgagattctttcttccataatattatatatagtatgtgttttgttttcagt |
278 |
Q |
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| T |
3221985 |
catctctaaagattcccactaatggatgaatggcatatttcaaactacttgagattcttccttcc---atattatatatagtatgtgttttgttttcagt |
3221889 |
T |
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| Q |
279 |
ggctgccttaacatggacgcacg------------------tttatagcttctccattttcacggtaaaatgcatcaaaattagcagtgaaatgtgtatt |
360 |
Q |
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| T |
3221888 |
ggctgccttaacatggacgcacgttctgttagaagctacaatttatagcttctccattttcacagtaaaatgcatcaaaatttgcagtgaaatgtgtatt |
3221789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 3186435 - 3186498
Alignment:
| Q |
151 |
caaaggagaggcaaacagacgaaaatgacatctctaaagattcccactaatggatgaatggcat |
214 |
Q |
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| T |
3186435 |
caaaggagaggcaaagagacagaaatgacttctcttgagattcccactaatggatgcatggcat |
3186498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 447 - 569
Target Start/End: Complemental strand, 1140758 - 1140636
Alignment:
| Q |
447 |
ttgaaattaattaaaaatccaaactgcataatataactacccataaccccctcaaacacacttcacttcataacatggtttctaaataacaaaagcgttg |
546 |
Q |
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| T |
1140758 |
ttgaaattaatataaaatctaaactgcatagtataaccaccgataaccccctcaaacacacttcacttcataacatggtttctataaaacaaaagcgttg |
1140659 |
T |
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| Q |
547 |
cataccaatcatatcccacctct |
569 |
Q |
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| T |
1140658 |
cataccaatcatatcccacctct |
1140636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 641 - 740
Target Start/End: Complemental strand, 1140475 - 1140376
Alignment:
| Q |
641 |
gactcaaactaactttcacatgtatttctcttttgatattaaaatggaaactttcacactagagagagatgggttccataggtagcatggattcacgagg |
740 |
Q |
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| T |
1140475 |
gactcaaactaactttcacatgaatttctcttttgatattaaaaaagaaacattcacactagagagagatgggttccataggtagcatggattcacgagg |
1140376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 583 - 644
Target Start/End: Complemental strand, 1140577 - 1140516
Alignment:
| Q |
583 |
ttttgatataactgtttctttctttctaactatttggttgtcattgattggatgcagggact |
644 |
Q |
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| T |
1140577 |
ttttaatataaatgtttctttctttataactatttggttgtcattgattggatgcagggact |
1140516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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