View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_34 (Length: 273)
Name: NF16235_high_34
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5823168 - 5822919
Alignment:
| Q |
1 |
ggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgata |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
5823168 |
ggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagacgaatgtgtagaagcatgtggtgttgata |
5823069 |
T |
|
| Q |
101 |
gaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823068 |
gaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttga |
5822969 |
T |
|
| Q |
201 |
ccttttcttcaatttggctgctggagaaggtaacaattgtttgttaatgc |
250 |
Q |
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| T |
5822968 |
ccttttctttaatttggctgctggagaaggtaacaattgtttgttaatgc |
5822919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 5828709 - 5828958
Alignment:
| Q |
1 |
ggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5828709 |
ggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagatcaatgtgtggaagcatgtggtgttgata |
5828808 |
T |
|
| Q |
101 |
gaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttga |
200 |
Q |
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| T |
5828809 |
gaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttga |
5828908 |
T |
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| Q |
201 |
ccttttcttcaatttggctgctggagaaggtaacaattgtttgttaatgc |
250 |
Q |
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||||||||| ||||||||||||||||||||||| | |||||||||||||| |
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| T |
5828909 |
ccttttctttaatttggctgctggagaaggtaagacttgtttgttaatgc |
5828958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5833046 - 5832814
Alignment:
| Q |
1 |
ggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgata |
100 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5833046 |
ggtgaaattgagtatcaatgtagaacatctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgttgata |
5832947 |
T |
|
| Q |
101 |
gaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||| || ||| |||||| | ||||| || || |||||||| |
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| T |
5832946 |
gaagttctgttggtatttcatctgatgctttctttgagccacaattcaccggcaaactttgctcaccagcttgttacaaaaagtgccctaacattgttga |
5832847 |
T |
|
| Q |
201 |
ccttttcttcaatttggctgctggagaaggtaa |
233 |
Q |
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||||||||||||| ||||||||||||| ||||| |
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|
| T |
5832846 |
ccttttcttcaatatggctgctggagagggtaa |
5832814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 24038658 - 24038434
Alignment:
| Q |
9 |
cgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttct |
108 |
Q |
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||||||||||||| | ||||| ||||| || ||||| |||| || | ||||||||||||||| ||||||||| |||||||||| ||||| || | || | |
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| T |
24038658 |
cgagtatcaatgtaggacatcagaagtagtgttggagcgaatggcgggatacatagagacagatcaatgtgtgaaagcatgtggagttgaaaggaatttt |
24038559 |
T |
|
| Q |
109 |
gttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttct |
208 |
Q |
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|| || ||||| || ||||| || ||||||| | |||||| ||| |||||||| ||||||||| | || || ||||||||||||||||||| || |
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| T |
24038558 |
gtcggaatttcttccgatgcattgcttgagccacaattcacagccaaactttgttcatcatcttgttaccaaaattgccccaatattgttgacctttact |
24038459 |
T |
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| Q |
209 |
tcaatttggctgctggagaaggtaa |
233 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
24038458 |
tcaatttggctgctggggaaggtaa |
24038434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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