View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_36 (Length: 255)
Name: NF16235_high_36
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 2723069 - 2722853
Alignment:
| Q |
21 |
acgactcgaataacagtgtcactgtcacaagcttgcgaggcagataggatacatatgatggaatgaagcatgactctcaagaaattaatgatatatacaa |
120 |
Q |
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| T |
2723069 |
acgactcgaataacagtgtcactgtcacaagcttgcaaggcagatagaatacatatgatggaatgaagcatgactctcaagaatttaatgatatatacaa |
2722970 |
T |
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| Q |
121 |
ctgtcattgacaaatcttgttcatcataaaatttatgaagcatgatccatcatttttccaagagtatgctacatctaacaataatgttcaaaatatgagt |
220 |
Q |
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| T |
2722969 |
ctgtcattgacaaatcttgttcatcataaaattgatgaagcatgatccatcatttttccaagagtatgctacatctaacaataatgttcaaaatatgagt |
2722870 |
T |
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| Q |
221 |
tctgtaccggatgagag |
237 |
Q |
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||||||||||||||||| |
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| T |
2722869 |
tctgtaccggatgagag |
2722853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 2744900 - 2744806
Alignment:
| Q |
21 |
acgactcgaataacagtgtcactgtcacaagcttgcgaggcagataggatacatatgatggaatgaagcatgactctcaagaaattaatgatatatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2744900 |
acgactcgaataacagtgtcactgtcacaagcttgcaaggc---tagaatacatatgatggaatgaagcatgactctcaagaatttaatgatatatac |
2744806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 2744779 - 2744658
Alignment:
| Q |
116 |
tacaactgtcattgacaaatcttgttcatcataaaatttatgaagcatgatccatcatttttccaagagtatgctacatctaacaataatgttcaaaata |
215 |
Q |
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|||| ||||||| |||||||||||| |||||||||||| ||| ||||| ||||||||||||||| | || |||||||||||| ||| |||||| |||||| |
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| T |
2744779 |
tacagctgtcatggacaaatcttgtccatcataaaattgatggagcataatccatcatttttccgaaagcatgctacatctagcaaaaatgttgaaaata |
2744680 |
T |
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| Q |
216 |
tgagttctgtaccggatgagag |
237 |
Q |
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|||||||||| ||||| ||||| |
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| T |
2744679 |
tgagttctgtgccggacgagag |
2744658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 2716446 - 2716380
Alignment:
| Q |
21 |
acgactcgaataacagtgtcactgtcacaagcttgcgaggcagataggatacatatgatggaatgaa |
87 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
2716446 |
acgactcgaataacagtgtcactgtcacaagcttgcaaggcagatagaatacatatgatggaatgaa |
2716380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 2703831 - 2703772
Alignment:
| Q |
21 |
acgactcgaataacagtgtcactgtcacaagcttgcgaggcagataggatacatatgatg |
80 |
Q |
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|||||||||| |||||||| |||||||||||||||| ||| |||||| |||||||||||| |
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| T |
2703831 |
acgactcgaaaaacagtgtaactgtcacaagcttgcaaggtagatagaatacatatgatg |
2703772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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