View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_high_40 (Length: 244)
Name: NF16235_high_40
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 421108 - 421322
Alignment:
| Q |
9 |
tgaaatgaaattaaaatcacgttgcaacaagaagaatgagattattagaagtaaaatatataaaagtcattctttatttttggaggtgtaaatagcaata |
108 |
Q |
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| T |
421108 |
tgaaatgaaattaaaatcacgttgtaacaagaagaatgagattattagaagtaaaatatataaaagtcattctttatttttggaggtgtaaatagcaata |
421207 |
T |
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| Q |
109 |
agatagccctaacctaatttgctgaaaagttatggttgggnnnnnnnnnnnnctttatctatccatccatctatctaactcatttcatttgattcagaga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
421208 |
agatagccctaacctaatttgctgaaaagttatggttggg----gagagagactttatctatccatccatctatctaactcatttcatttgattcagaga |
421303 |
T |
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| Q |
209 |
aaacagtgtgtaatgtaat |
227 |
Q |
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||||||||||||||||||| |
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| T |
421304 |
aaacagtgtgtaatgtaat |
421322 |
T |
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