View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_11 (Length: 418)
Name: NF16235_low_11
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 32365123 - 32365514
Alignment:
| Q |
18 |
tctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32365123 |
tctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgtttgtctaacattgtcatcatc |
32365222 |
T |
|
| Q |
118 |
aattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32365223 |
aattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctcc |
32365322 |
T |
|
| Q |
218 |
atgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctat |
317 |
Q |
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|||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365323 |
atgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctat |
32365422 |
T |
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| Q |
318 |
tttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacctgtgattcttcatct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365423 |
tttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacctgtgattcttcatct |
32365514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 32376808 - 32377199
Alignment:
| Q |
18 |
tctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376808 |
tctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatc |
32376907 |
T |
|
| Q |
118 |
aattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32376908 |
aattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctcc |
32377007 |
T |
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| Q |
218 |
atgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctat |
317 |
Q |
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|||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377008 |
atgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctat |
32377107 |
T |
|
| Q |
318 |
tttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacctgtgattcttcatct |
409 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
32377108 |
tttctataattcctccttgttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacctgtgattcttcatct |
32377199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 36121741 - 36122044
Alignment:
| Q |
18 |
tctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatc |
117 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| || | ||| |||||| |||| || ||| | ||||||| ||| |||||| ||||||| || |
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| T |
36121741 |
tctttctcatttggatcctccaaaaaccaccatagagcataccgaaaaaacatagaacaatcccagcacctactagacattgcctaacagtgtcatcctc |
36121840 |
T |
|
| Q |
118 |
aattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctcc |
217 |
Q |
| |
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||| |||||| |||||| | || ||||||||||| |||||||| || |||||||| || || || |||||||||||||| ||||| |||||||||||| |
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| T |
36121841 |
aatattaacagcagccaagatgaaaatccaaaagggggccatacagaaaagcataaaagtggcaatgtgaacatacatgtttccaaagccaagtctctcc |
36121940 |
T |
|
| Q |
218 |
atgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctat |
317 |
Q |
| |
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|| ||||||||||| |||||||| | ||||||||||| | ||||| | || | ||| | |||||||||||||||||| |||||||| || ||||||| |
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| T |
36121941 |
atattccaaccaaatgcacaaaaagtacagaaaagtgataaatatgcttgagagatatcgtcccaaatgtcaagtattccaccactccactttggtctat |
36122040 |
T |
|
| Q |
318 |
tttc |
321 |
Q |
| |
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|||| |
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|
| T |
36122041 |
tttc |
36122044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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