View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_14 (Length: 398)
Name: NF16235_low_14
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 3629795 - 3629398
Alignment:
| Q |
1 |
ggggtgataactgggttgatgatatcagagaaaaatgagggtttcacttgagctggggagggcaaattcaaagccatgataaacgaatatttagccaaat |
100 |
Q |
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| T |
3629795 |
ggggtgataactgggttgatgatatcagagaaaaatgagggtttcacttgagctggggagggcaaattcaaagccatgatcaacgaatatttagccaaat |
3629696 |
T |
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| Q |
101 |
nnnnnnnnnn-ttgatcaacgaattaaatagttgaatcagccactcaatttacactgacaagaaaatgaaccaatgagagtatttataagcaatccaatt |
199 |
Q |
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| T |
3629695 |
aaaaaaaaaaattgatcaacgaattaaatagttgaatcagccactcaatttacactgacaagaaaatgaaccaatgagagtatttataagcaatccaatt |
3629596 |
T |
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| Q |
200 |
atgtacctagtcagaaatattaaaaggtgacaaattaagtgaaaaaataattgccacaatttatatgtgtggtctttgaaatgataaggataatattatt |
299 |
Q |
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| T |
3629595 |
atgtacctagtcagaaatattaaaaggtgacaaattaagtgaaaaaataattgccacaatttatatgtgtggtctttgaaatgataaggataatattatt |
3629496 |
T |
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| Q |
300 |
gcagacctttgggaatttttgttgttaattaaggttcttatttattggtagnnnnnnnnnnnnngaaagtatttattgttacacttgtttagttcctat |
398 |
Q |
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| T |
3629495 |
gcagacctttgggaattttt-ttgttaattaaggttcttatttattggtagtttttttatttttgaaagtatttattggtacacttgtttagttcctat |
3629398 |
T |
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