View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_15 (Length: 393)
Name: NF16235_low_15
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 421131 - 420741
Alignment:
| Q |
1 |
caacgtgattttaatttcatttcatttgacaggtacttattttttctagagagacatgttggactatgaatggggtaacccatcaaacatcatgcttacc |
100 |
Q |
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| T |
421131 |
caacgtgattttaatttcatttcatttgacaggtactt--tttttctagagagacatgttggactatgaatggggtaacccatcaaacatcatgcttacc |
421034 |
T |
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| Q |
101 |
ggaaatgaagacaactccggtgcagcagccaccgatcaagcccaccgtcaaatcttcgaccactatgcttctcaagctatgttatccgacaactacctta |
200 |
Q |
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| T |
421033 |
ggaaatgaagacaactccggtgcagcagccaccgatcaagcccaccgtcaaatcttcgaccactatgcttctcaagctatgttatccgacaactacctta |
420934 |
T |
|
| Q |
201 |
acggacctggtggtggacccaccatcgacataaacagtggtgattttactcatcaccacaaccagtttagcccacacgcccagcagcaccataatatcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
420933 |
acggacctggtggtggacccaccatcgacataaacagtggtgattttactcatcaccacaaccagtttagcccacacaaccagcagcaccataatatcca |
420834 |
T |
|
| Q |
301 |
tcagtccttcttcgacccacgggcttttcatggagggtcatcaactgcttcttcttaccctccacctcaaccacaacctccaccttccatgct |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
420833 |
tcagtccttcttcgacccacgggcttttcatggagggtcatcaactgcttcttcttaccctccacctcaaccacaacctcctccttccatgct |
420741 |
T |
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