View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_17 (Length: 375)
Name: NF16235_low_17
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 13212531 - 13212894
Alignment:
| Q |
1 |
agctcaatgaacaatgatgtttctactctactgtgtaggttctatttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataaccct |
100 |
Q |
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| T |
13212531 |
agctcaatgaacaatgatgtttctactctactgtgtaggttctatttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataaccct |
13212630 |
T |
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| Q |
101 |
aagttattttctctcatctgcaactatgatctatgctcaacacctcacattgaatcttccagaaccatcaatcgatctattgtatctcggaatagcgctg |
200 |
Q |
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| T |
13212631 |
aagttattttctctcatctgcaactctgatctatgctcaacacctcacatcgaatcttccagaaccatcaattgatctattgtatcctggaatcgcgctg |
13212730 |
T |
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| Q |
201 |
tttcttgtaggcgtcaccggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgt |
300 |
Q |
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| T |
13212731 |
tttcttgtaggcgtcaccggaaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgt |
13212830 |
T |
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| Q |
301 |
ttgattttgtgatatgtcctcattatcttttcgagatcatagggttttatggattttccttcat |
364 |
Q |
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| T |
13212831 |
ttgattttgtgatatgtcctcattatcttttcgagatcatagggttttatggattttccttcat |
13212894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 13165929 - 13166036
Alignment:
| Q |
219 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
318 |
Q |
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| T |
13165929 |
ggcaacttctaccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13166028 |
T |
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| Q |
319 |
ctcattat |
326 |
Q |
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| T |
13166029 |
ctcattat |
13166036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 13188813 - 13188911
Alignment:
| Q |
228 |
taccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtcctcattat |
326 |
Q |
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| T |
13188813 |
taccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtcctcattat |
13188911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 13188707 - 13188811
Alignment:
| Q |
219 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
318 |
Q |
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| T |
13188707 |
ggcaatttataccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13188806 |
T |
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| Q |
319 |
ctcat |
323 |
Q |
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||||| |
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| T |
13188807 |
ctcat |
13188811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 13188533 - 13188637
Alignment:
| Q |
45 |
tttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataaccctaagttattttctctcatctgcaactatgatctatgctcaacacc |
144 |
Q |
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||||| ||||||||||||||||||||| |||||| ||||||| || || || || || || ||| | ||| ||| |||||||||||||| ||||||| |
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| T |
13188533 |
tttgttcacaaatatagtggttctatgattcttgattctgcaattccaatcactctgagctactttatgtcaactgtaactatgatctatggccaacacc |
13188632 |
T |
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| Q |
145 |
tcaca |
149 |
Q |
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||||| |
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| T |
13188633 |
tcaca |
13188637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 13165755 - 13165859
Alignment:
| Q |
45 |
tttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataaccctaagttattttctctcatctgcaactatgatctatgctcaacacc |
144 |
Q |
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||||| ||||||||||||||||||||| |||||| ||||||| || || || || ||||| || | ||| || |||||||||||||| ||||||| |
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| T |
13165755 |
tttgttcacaaatatagtggttctatgattcttgattctgcaattccaatcactctgagttaccttatgtcaactataactatgatctatggccaacacc |
13165854 |
T |
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| Q |
145 |
tcaca |
149 |
Q |
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||||| |
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| T |
13165855 |
tcaca |
13165859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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