View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16235_low_18 (Length: 369)
Name: NF16235_low_18
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 50 - 360
Target Start/End: Complemental strand, 42575763 - 42575452
Alignment:
| Q |
50 |
agagccaattctctcatcttccttatcatctcttgtg-cagagagttgtaactactataacttaggatccatatttatattatgtgtatattctgttttc |
148 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42575763 |
agagccaattttctcatcttccttatcatctcttgtggcagagagttgtaactactataacttagggtccatatttatattatgtgtatattctgttttc |
42575664 |
T |
|
| Q |
149 |
atgcatacaaatctattttatttatgattttgtgtttaactattacattaacataaatccagtattacttgaaaaagtaactactatcaatttggatttg |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42575663 |
atgcatacaaatctattttatttatgattttgtgtttaactattacattaacataaatccagtattacttgaaaaagtaactactatcattttggatttg |
42575564 |
T |
|
| Q |
249 |
tctacaaacatgaccatgatttttaccaccaaaatagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtgattgcatt |
348 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42575563 |
tctacaaacatgaccatgatttttaccatcaaaacagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtgattgcatt |
42575464 |
T |
|
| Q |
349 |
tttcagaattat |
360 |
Q |
| |
|
|||||||||||| |
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|
| T |
42575463 |
tttcagaattat |
42575452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 51 - 360
Target Start/End: Complemental strand, 20703497 - 20703182
Alignment:
| Q |
51 |
gagccaattctctcatcttccttatcatctcttgtgc-agagagttgtaactactataact----taggatccatatttatat-tatgtgtatattctgt |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| | |||||||| |||| |||||| || |||| ||||| ||||||| | ||| ||||| ||| |
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| T |
20703497 |
gagccaattctcccatcttccttatcatttcttggggtagagagttttaacaactatagctagcttagggtccatgtttatatctctgttgatattttgt |
20703398 |
T |
|
| Q |
145 |
tttcatgcatacaaatctattttatttatgattttgtgtttaactattacattaacataaatccagtattacttgaaaaagtaactactatcaatttgga |
244 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||| | ||||| |||| |
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| T |
20703397 |
tttcatgcatacatatctattttatttacgattttgcgtttaaaaattacattaatataaatccagtattacttcaaaaagtaactattgtcaatctgga |
20703298 |
T |
|
| Q |
245 |
tttgtctacaaacatgaccatgatttttaccaccaaaatagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtgattg |
344 |
Q |
| |
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|||||||||||| |||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20703297 |
tttgtctacaaatctgactatgatatttaccatcaaaacagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtaattg |
20703198 |
T |
|
| Q |
345 |
catttttcagaattat |
360 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
20703197 |
catttttcaaaattat |
20703182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 164 - 360
Target Start/End: Original strand, 42574630 - 42574826
Alignment:
| Q |
164 |
ttttatttatgattttgtgtttaactattacattaacataaatccagtattacttgaaaaagtaactactatcaatttggatttgtctacaaacatgacc |
263 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||| |||||||| |||| |
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|
| T |
42574630 |
ttttatttatgatttggtatttaactattacattagcataaatccagtaatacttgaaaaagtaactactgtcaatctggatttatctacaaatctgact |
42574729 |
T |
|
| Q |
264 |
atgatttttaccaccaaaatagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtgattgcatttttcagaattat |
360 |
Q |
| |
|
||||| ||||||| |||| | |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
42574730 |
atgatatttaccataaaaacaatttgttgtgaatgcatataatttctttacataagacatccattgagttgtttgtgattgcatttttgagaattat |
42574826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 42564269 - 42564374
Alignment:
| Q |
52 |
agccaattctctcatcttccttatcatctctt-gtgcagagagttgtaactactataacttaggatccatatttata-ttatgtgtatattctgttttca |
149 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| | | |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| | |
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|
| T |
42564269 |
agccaattcttccatcttccttgtcatctcttcgggtagagagttgtaactactatagcttagggtccatatttatatttatgtgtatattctgttttta |
42564368 |
T |
|
| Q |
150 |
tgcata |
155 |
Q |
| |
|
|||||| |
|
|
| T |
42564369 |
tgcata |
42564374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 64 - 360
Target Start/End: Complemental strand, 14951604 - 14951305
Alignment:
| Q |
64 |
catcttccttatcatctcttgtgc-agagagttgtaactactataacttaggatccatatttatattat-gtgtatattctgttttcatgcatacaaatc |
161 |
Q |
| |
|
||||||||||||||||| ||| | ||||| |||||||||||||| |||||| |||||||||||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
14951604 |
catcttccttatcatcttttggggtagagatttgtaactactatagcttagggtccatatttatatttttgtgtatattctattttcatgcatacaaatc |
14951505 |
T |
|
| Q |
162 |
tattttatttatgattttgtgtttaactattacattaacataaatccagtattacttgaaaaagtaactactatcaatttggatttgtctacaaacatga |
261 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| ||||| | ||||| |||||||||||| ||| ||| |
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|
| T |
14951504 |
tatttagtttatgattttgcatttaactattacattaccattaatccagtattacttgaaaaagcaactattgtcaatctggatttgtctataaatctga |
14951405 |
T |
|
| Q |
262 |
c-catgatttttaccaccaaaatagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtgattgcatttttcagaattat |
360 |
Q |
| |
|
| | ||| ||||| | |||| |||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14951404 |
ctaaagatatttacaatgaaaagagtttgttgtaaatgcatagaatttctttataaaagacttccattgaggtgtttgtgattgcatttttcagaattat |
14951305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 64 - 359
Target Start/End: Complemental strand, 14956381 - 14956083
Alignment:
| Q |
64 |
catcttccttatcatctctt-gtgcagagagttgtaactactataacttaggatccatatttatattat-gtgtatattctgttttcatgcatacaaatc |
161 |
Q |
| |
|
||||||||||||||||| || | | ||||| |||||||||||||| |||||| |||||||||||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
14956381 |
catcttccttatcatcttttagggtagagatttgtaactactatagcttagggtccatatttatatttttgtgtatattctattttcatgcatacaaatc |
14956282 |
T |
|
| Q |
162 |
tattttatttatgattttgtgtttaactattacat-taacataaatccagtattacttgaaaaagtaactactatcaatttggatttgtctacaaacatg |
260 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||| || ||| ||||||||||||||||||||| | ||| | | ||||||||||||||| ||| || |
|
|
| T |
14956281 |
tatttagtttttgattttgtatttaactattacatatagcattaatccagtattacttgaaaaaacacctattgtgaatttggatttgtctgtaaatctg |
14956182 |
T |
|
| Q |
261 |
ac-catgatttttaccaccaaaatagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtgattgcatttttcagaatta |
359 |
Q |
| |
|
|| | ||| ||||| | |||| |||||||||| |||| |||| | ||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14956181 |
actaaagatatttacaattaaaagagtttgttgtaaatgtatatcacttc-ttatagaatacttccattgagttgtttgtgattgcatttttcagaatta |
14956083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 360
Target Start/End: Original strand, 14955320 - 14955625
Alignment:
| Q |
50 |
agagccaattctctcatcttccttatcatctcttgt-gcagagagttgtaactactataacttaggatccatatttatatta-tgtgtatattctgtttt |
147 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||| |||||| |||| |||||| |||||| | ||| |||||||| ||| ||||| | |||| |
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|
| T |
14955320 |
agagccaattctcccatcttccttatcatctattggagcaaagagttctaacaactatagcttagggttcatgtttatatttctgttgatattttatttt |
14955419 |
T |
|
| Q |
148 |
catgcatacaaatctattttatttatgattttgtgtttaactattacattaacataaatccagtattacttgaaaaagtaactactatcaatttggattt |
247 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||| |||| | |||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
14955420 |
catgcatacaaatctattttattt-------tgagtttaactattacattagcatgaatcgattattacttgaaaaagttactattgtcaatttggattt |
14955512 |
T |
|
| Q |
248 |
gtctacaaacatgaccatgatttttaccaccaaaatagtttgttgtgaatgcatataatttctttatagaagacttccattgagttgtttgtgattgcat |
347 |
Q |
| |
|
||| ||||| || ||| | ||||||| ||||| | ||||||||||||||||||| ||||| | |||| ||||||||| || |||||||||||| ||| |
|
|
| T |
14955513 |
gtcaacaaatcccactatggtctttaccatcaaaacaatttgttgtgaatgcatatattttctctctagaggacttccatggaattgtttgtgatttcat |
14955612 |
T |
|
| Q |
348 |
ttttcagaattat |
360 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
14955613 |
ttttcaaaattat |
14955625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 128 - 288
Target Start/End: Original strand, 10035674 - 10035834
Alignment:
| Q |
128 |
ttatgtgtatattctgttttcatgcatacaaatctattttatttatgattttgtgtttaactattacattaacataaatccagtattacttgaaaaagta |
227 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
10035674 |
ttatgtgtatattctgttttaatgtatacaaatcaattttatttatgattttgcgtttaactattacattagcataagtccagtattacttgaaaaagta |
10035773 |
T |
|
| Q |
228 |
actactatcaatttggatttgtctacaaacatgaccatgatttttaccaccaaaatagttt |
288 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||| || || ||||||| ||||| ||||| |
|
|
| T |
10035774 |
actactgtcaatctggatttgtctacaaatctgactattatctttaccatcaaaacagttt |
10035834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 10035837 - 10035880
Alignment:
| Q |
317 |
aagacttccattgagttgtttgtgattgcatttttcagaattat |
360 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10035837 |
aagactttcattgagttgtttgcgattgcatttttcagaattat |
10035880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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