View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_20 (Length: 366)
Name: NF16235_low_20
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 3629433 - 3629113
Alignment:
| Q |
1 |
tgaaagtatttattggtacacttgtttagttccaattaacccaacaaaaatggataatggaaccaagatctagaagcgaccataaaatgggtcccaatga |
100 |
Q |
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| T |
3629433 |
tgaaagtatttattggtacacttgtttagttcctatgaacccaacaaaaatggataatggaaccaagatctagaagcaaccgtaaattgggtcccaatga |
3629334 |
T |
|
| Q |
101 |
ataaccggtactcgttgttagatccttataaatcaagaaatgaagattaggtcttctcaagtgatgaaacttccacttccataatgctaattgattgata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629333 |
ataaccggtactcgttgttagatccttataaatcaagaaatgaagattaggtcttctcaagtgatgaaacttccacttccataatgctaattgattgata |
3629234 |
T |
|
| Q |
201 |
ttaaccacacaacagatactgaaaggcaacgttttaaaagtattcttattttcttgtgcataattcatgtggtccccaaatttatatgactttactcata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3629233 |
ttaaccacacaacagatactgaaaggcaacgttttaaaagtattcttattttcttgtgcataattcatgtggtccccaaatttatatgactttgctcata |
3629134 |
T |
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| Q |
301 |
gatatgtgtttgaaatcaaat |
321 |
Q |
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||||||||||||||||||||| |
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| T |
3629133 |
gatatgtgtttgaaatcaaat |
3629113 |
T |
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