View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_23 (Length: 349)
Name: NF16235_low_23
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 28 - 330
Target Start/End: Original strand, 26157205 - 26157507
Alignment:
| Q |
28 |
cacagacctcctaaggctcnnnnnnngaaacacttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtc |
127 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26157205 |
cacagacctcctaaggctcaaaaaaagaaacacttattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgttttgaagcaggtc |
26157304 |
T |
|
| Q |
128 |
ttcaagtctgtcggcaggggtacaatatgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26157305 |
ttcaagtctgtcggcaggggtacaatatgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaaagcctgt |
26157404 |
T |
|
| Q |
228 |
caaaaccttgactataaaagagcataagaaatcacgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgcc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157405 |
caaaaccttgactataaaagagcataagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgcc |
26157504 |
T |
|
| Q |
328 |
aat |
330 |
Q |
| |
|
||| |
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|
| T |
26157505 |
aat |
26157507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 28 - 330
Target Start/End: Original strand, 26170503 - 26170805
Alignment:
| Q |
28 |
cacagacctcctaaggctcnnnnnnngaaacacttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtc |
127 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26170503 |
cacagacctcctaaggctcaaaaaaagaaacacttattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgttttgaagcaggtc |
26170602 |
T |
|
| Q |
128 |
ttcaagtctgtcggcaggggtacaatatgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgt |
227 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26170603 |
ttcaagtctgtcggcaggggtacaatatgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaaagcctgt |
26170702 |
T |
|
| Q |
228 |
caaaaccttgactataaaagagcataagaaatcacgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgcc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170703 |
caaaaccttgactataaaagagcataagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgcc |
26170802 |
T |
|
| Q |
328 |
aat |
330 |
Q |
| |
|
||| |
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|
| T |
26170803 |
aat |
26170805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 330
Target Start/End: Complemental strand, 44784268 - 44783966
Alignment:
| Q |
28 |
cacagacctcctaaggctcnnnnnnngaaacacttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtc |
127 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
44784268 |
cacagacctcccaaggctcaaaaaaagaaacacttattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggttgaagcaggtc |
44784169 |
T |
|
| Q |
128 |
ttcaagtctgtcggcaggggtacaatatgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgt |
227 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
44784168 |
ttcaagtctgtcgacaggggtacaatatgttgaatctgttaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatttaaagcctgt |
44784069 |
T |
|
| Q |
228 |
caaaaccttgactataaaagagcataagaaatcacgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgcc |
327 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44784068 |
caaaaccttgactacaaaagagcgtaagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgcc |
44783969 |
T |
|
| Q |
328 |
aat |
330 |
Q |
| |
|
||| |
|
|
| T |
44783968 |
aat |
44783966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 59 - 330
Target Start/End: Original strand, 2896365 - 2896636
Alignment:
| Q |
59 |
acttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaatatgtt |
158 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| |
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| T |
2896365 |
acttattcagatcacttcaagcgacaaagtttttccagaccacagaacttgattgggttgaagcaggtcttcaagtttgtaagcaggggtacaacatgtt |
2896464 |
T |
|
| Q |
159 |
gaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcataagaaa |
258 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||| ||||||| |
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|
| T |
2896465 |
gaatctgttgatacacaggaaaaatttgaactaccttcaccttgattataattttaatttgaagcctgtcaaaaccttgactacaaaagagcgtaagaaa |
2896564 |
T |
|
| Q |
259 |
tcacgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
330 |
Q |
| |
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||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2896565 |
tcacgatttggtaatgcttttcatctctgtcgtgagatccttcgtttgacgaaacttgtggtggatgccaat |
2896636 |
T |
|
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