View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16235_low_28 (Length: 313)

Name: NF16235_low_28
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16235_low_28
NF16235_low_28
[»] chr1 (1 HSPs)
chr1 (18-313)||(45593926-45594221)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 45594221 - 45593926
Alignment:
Q  18 aatgtccagtctaattctccttctacacgccacatggtccagtgggaaagtgcaagggttgaagcagagacgaggctgtcgttggagtccactttgctta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45594221 aatgtccagtctaattctccttctacacgccacatggtccagtgggaaagtgcaagggttgaagcagagacgaggctgtcgttggagtccactttgctta 45594122  T
Q  118 attcaggctctacaactaaaacataccctgattactttcttcaactttggcattctgatgttggagagaaatttcgtgcaggagtagtgtgtcaaagcat 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  45594121 attcaggctctacgactaaaacataccctgattactttcttcaactttggcattctgatgttggagacaaattccgtgcaggagtagtgtgtcaaagcat 45594022  T
Q  218 cgtctcattggaggaatcatgttcagatgtctcattgcaggtgaaaaacaacggaacacaaagcctgaaagtgtcaacaccaaagattgaagatgt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  45594021 cgtctcattggaggaatcatgttcagatgtctcattgcaggtgaaaaacaaccgaacacaaagcctgaaagtgtcaacaccaaagcttgaagatgt 45593926  T

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