View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_29 (Length: 307)
Name: NF16235_low_29
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 43386656 - 43386372
Alignment:
| Q |
1 |
tggaggggggacatatggactcttgtgtcataattataaactgtatatggtattaatggacgtatatataaatcacaatcatatatgtatgtatgcattt |
100 |
Q |
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| T |
43386656 |
tggaggggggacat--ggactcttgtgtcataattataaactgtatatggttttaatggacgtatatataaatcacaatcatatatgtatgtatgcattt |
43386559 |
T |
|
| Q |
101 |
attgtgtgcttaattagcaaacaaactaaatggtgtaccattaaataaaccctacttgttgagctagcgtatatatgtgtggtttccatttgtttgtcct |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43386558 |
cttgtgtgcttaattagcaaacaaattaaatggtgtacaattaaataaaccctacttgttgagctagcgtatatatgtgtggtttccatttgtttgtcct |
43386459 |
T |
|
| Q |
201 |
ggaatcgagagaaaagtagtagcaagttgatgtttcaatttgctgcagttaagacaattaattattctttctctataaacatatatg |
287 |
Q |
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| T |
43386458 |
ggaatcgagagaaaagtagtagcaagttgatgtttcaatttgctgcggttaagacaattaattattctttctctataaacatatatg |
43386372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 50122978 - 50122943
Alignment:
| Q |
150 |
ccctacttgttgagctagcgtatatatgtgtggttt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50122978 |
ccctacttgttgagctagcgtatatatgtgtggttt |
50122943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 181
Target Start/End: Original strand, 31951404 - 31951435
Alignment:
| Q |
150 |
ccctacttgttgagctagcgtatatatgtgtg |
181 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31951404 |
ccctacttgttgagctagcgtatatatgtgtg |
31951435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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