View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_32 (Length: 300)
Name: NF16235_low_32
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 40280020 - 40279752
Alignment:
| Q |
14 |
agaggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
113 |
Q |
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| T |
40280020 |
agaggaaagaaggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
40279921 |
T |
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| Q |
114 |
ccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40279920 |
ccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaac |
40279821 |
T |
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| Q |
214 |
atgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40279820 |
atgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaac |
40279752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 40458330 - 40458598
Alignment:
| Q |
14 |
agaggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
113 |
Q |
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| T |
40458330 |
agaggaaagaaggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
40458429 |
T |
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| Q |
114 |
ccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458430 |
ccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaac |
40458529 |
T |
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| Q |
214 |
atgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458530 |
atgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaac |
40458598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 40284981 - 40284713
Alignment:
| Q |
14 |
agaggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcat |
113 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||| ||||||| ||||||||||||||||| |
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| T |
40284981 |
agaggaaagaaggaatgagatgtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcat |
40284882 |
T |
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| Q |
114 |
ccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaac |
213 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||| |
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| T |
40284881 |
ccattgatgacaaagaagagaaacatcaattggttgttcttgctgttaggtcaaatgatagggtgttgcaagctcgatcaattgaagtatttctgcaaac |
40284782 |
T |
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| Q |
214 |
atgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaac |
282 |
Q |
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| T |
40284781 |
atgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaac |
40284713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 39600588 - 39600421
Alignment:
| Q |
90 |
tgtggacaagagaaagcaatgcatccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttg |
189 |
Q |
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||||||||||| || || ||| ||||| | || ||||||||||||| || ||||||||||| ||| |||||||||| ||||| || |||||||| ||| |
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| T |
39600588 |
tgtggacaagaaaacgctatgaatccaataatcacaaagaagagaacaatcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttc |
39600489 |
T |
|
| Q |
190 |
atcaattgaagtatttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttat |
257 |
Q |
| |
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| || ||||| ||||||||||||||| |||| || || || |||||||||||| | ||||||||| |
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| T |
39600488 |
aacatttgaaatatttctgcaaacatagcaatattcataggactggtgccaaaaatcgtttgatttat |
39600421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 39781385 - 39781506
Alignment:
| Q |
90 |
tgtggacaagagaaagcaatgcatccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttg |
189 |
Q |
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||||||||||| || || ||| ||||| | || ||||||||||||| || ||||||||||||||| | |||||||| ||||| || |||||||| ||| |
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| T |
39781385 |
tgtggacaagaaaatgctatgaatccaataatcacaaagaagagaaccattaattggttgttcttgttattgggtcagatgattgggtgttgcaagcttc |
39781484 |
T |
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| Q |
190 |
atcaattgaagtatttctgcaa |
211 |
Q |
| |
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| || ||||||||||||||||| |
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| T |
39781485 |
aacatttgaagtatttctgcaa |
39781506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 25044476 - 25044391
Alignment:
| Q |
126 |
aagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaa |
211 |
Q |
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||||||| ||||| ||||||||||| |||||||||| |||||| | || |||||||||||| | |||||||||||||| ||||| |
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| T |
25044476 |
aagaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaa |
25044391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 25040729 - 25040653
Alignment:
| Q |
135 |
aatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaa |
211 |
Q |
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||||| ||||||||||| || || |||| ||||| || || |||||||| ||||| |||||||||||||| ||||| |
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| T |
25040729 |
aatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaa |
25040653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 28649944 - 28649868
Alignment:
| Q |
135 |
aatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaa |
211 |
Q |
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||||| ||||||||||| ||| ||||||| |||||| | || |||||||||||| | |||||||||||||| ||||| |
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| T |
28649944 |
aatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaattgaagtatttttgcaa |
28649868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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