View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_33 (Length: 296)
Name: NF16235_low_33
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 34754093 - 34754359
Alignment:
| Q |
19 |
ctacagggtgctgctgccccaattgttaataatgttgaactagcagttcatccattgcctcaacatttctggactgtggaagagaataacaggctggttg |
118 |
Q |
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| T |
34754093 |
ctacagggtgctgctgccccaattgttaataatgttgaattagcagttcatccattgcctcaacatttctggactgcggaagagaataacaggctggttg |
34754192 |
T |
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| Q |
119 |
aagcgagggagctgtatccggggcgcaaccagtggcgccggatacaacaagatgctgaatttgctccactatttggtgctatgacgatcgacgctctgcg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754193 |
aagcgagggagctgtatccggggcgcaaccagtggcgccggatacaacaagatgctgaatttgctccactatttggtgctatgacgatcgacgctctgcg |
34754292 |
T |
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| Q |
219 |
cgttagtacctttctctcatgaatctattgagtt--attatctgtacttgaatcttacctcttgttc |
283 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34754293 |
cgttagtacctttctcccatgaatctattgagttaaattatctgtacttgaatcttacctcttgttc |
34754359 |
T |
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