View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16235_low_35 (Length: 292)
Name: NF16235_low_35
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 41080570 - 41080311
Alignment:
| Q |
14 |
ttctcacaaataaaagatccttaaaacacaaagctatactgaagttgaagtgtttagttagaactcatcatggtgctagggatgatgctcataactgttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41080570 |
ttctcacaaataaaagatccttaaaacacaaagctatactgaagttgaagtgtttagttagaactcatcatggtgctagggatgatgctcataactgttg |
41080471 |
T |
|
| Q |
114 |
tagtcaaaaagaagatgaacaaggtaaacttggtttttacctagctaaagatcttccaaaagcagctacaagagcttttacagataatttaagggtgtta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41080470 |
tagtcaaaaagaagatgaacaaggtaaacttggtttttacctagctaaagatcttccaaaagcagctacaagagcttttacagataatttaagggtgtta |
41080371 |
T |
|
| Q |
214 |
tcacctaaaattttaccagctagggaattacttaggtatatgttaatgtcactcataaaa |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41080370 |
tcacctaaaattttaccagctagggaattacttaggtatatgttaatgtcactcataaaa |
41080311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 23073471 - 23073240
Alignment:
| Q |
19 |
acaaataaaagatccttaaaacaca-aagctatactgaagttgaagtgtttagttagaactcatcatggtgctagggatgatgctcataactgttgtagt |
117 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||||||| |||||||||||||| |||| || || || || || || || || | || ||||| | | |
|
|
| T |
23073471 |
acaaataaaagatccttaaaaaacagaagc-atactgaaattgaagtgtttagtacgaacgcaccacggcgcaagagaagactcttacaattgttgcatt |
23073373 |
T |
|
| Q |
118 |
caaaaagaagatgaacaaggtaaacttggtttttacctagctaaagatcttccaaaagcagctacaagagcttttacagataatttaagggtgttatcac |
217 |
Q |
| |
|
||||| |||||||| || |||| ||||||||| | ||| ||| ||| ||||||||||| |||| || |||| || ||||||||||| | |||| |
|
|
| T |
23073372 |
caaaaggaagatgagcagggtaggcttggttttcatttagggaaaactctcccaaaagcagcaacaaaagtttttgttgacaatttaagggtaatttcac |
23073273 |
T |
|
| Q |
218 |
ctaaaattttaccagctagggaattacttaggt |
250 |
Q |
| |
|
|||||||||| ||| | |||||||| ||||||| |
|
|
| T |
23073272 |
ctaaaattttgccaacaagggaattgcttaggt |
23073240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 23111036 - 23111121
Alignment:
| Q |
165 |
tcttccaaaagcagctacaagagcttttacagataatttaagggtgttatcacctaaaattttaccagctagggaattacttaggt |
250 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||| | ||||| |||||||| ||| | | |||| ||||||||| |
|
|
| T |
23111036 |
tcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttgccaacaaaggaaatacttaggt |
23111121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University