View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16235_low_36 (Length: 289)

Name: NF16235_low_36
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16235_low_36
NF16235_low_36
[»] chr2 (1 HSPs)
chr2 (1-289)||(12916633-12916919)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 12916919 - 12916633
Alignment:
Q  1 catgttgttctcacctttcttcatttctagagttttgaataagtgaacgcttcactctagaactctcttcatatttcttcttcattgagtcctaattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12916919 catgttgttctcacctttcttcatttctagagttttgaataagtgaacgcttcactctagaactctcttcatatttcttcttcattgagtcctaattttt 12916820  T
Q  101 cttagcagtgtccttttacattttacaatatatggtttcgaaaatggtcctatcaattgattgacaaaggtagttcttcactttgatatcctagttttag 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12916819 cttagcagtgtccttttacattttacaatat--ggtttcgaaaatggtcctatcaattgattgacaaaggtagttcttcactttgatgtcctagttttag 12916722  T
Q  201 tcgataaactctttcactcctttaaacttaactgtgaaaatgcatctagtttgcatatgtatccttacacattcccatcatatttctga 289  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12916721 tcgataaactcttccactcctttaaacttaactgtgaaaatgcatctagtttgcatatgtatccttacacattcccatcatatttctga 12916633  T

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