View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_38 (Length: 285)
Name: NF16235_low_38
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 11040133 - 11040398
Alignment:
| Q |
5 |
aaaaacaagaaaggtaactctactctttgttcaattcaataataaatgtaatcttcaaacttgaaaaggctaattaaactatactcgtagtagatctttt |
104 |
Q |
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| T |
11040133 |
aaaaacaagaaaggtaactctattctttgttcaattcaataataaatgcaatcttcaaacttgaaaaggctaattaaactatactcgtag---atctttt |
11040229 |
T |
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| Q |
105 |
cgattgaatcaagcttacggatttttaatatagaagctatacaaaatagtttcacttggatgttctacaacttcttcaagctctttggcagaatctcaat |
204 |
Q |
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| T |
11040230 |
ctattgaatcaagcttacggatttttaatatagaagctatacaaaatagtttcacttggatgttctacaacttcttcaagctctttggcagaatctcaat |
11040329 |
T |
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| Q |
205 |
cattagattaatctaatcgttagtatcttttacaatcaatcaataacataagctaatgttagctagtat |
273 |
Q |
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| T |
11040330 |
cattagattaatctaatcattagtatcttttacaatcaatcaataacataagctaatgttagctagtat |
11040398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11025079 - 11025126
Alignment:
| Q |
1 |
ccccaaaaacaagaaaggtaactctactctttgttcaattcaataata |
48 |
Q |
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||||||||| |||||||||||||||| |||| |||||||||||||||| |
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| T |
11025079 |
ccccaaaaagaagaaaggtaactctattcttcgttcaattcaataata |
11025126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 11025649 - 11025694
Alignment:
| Q |
228 |
tatcttttacaatcaatcaataacataagctaatgttagctagtat |
273 |
Q |
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|||| |||||||||||||||| ||||||||||| | |||||||||| |
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| T |
11025649 |
tatcctttacaatcaatcaatgacataagctaaggctagctagtat |
11025694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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