View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_39 (Length: 273)
Name: NF16235_low_39
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4253451 - 4253191
Alignment:
| Q |
1 |
cggtttgcatacgttgcttggattaatgatgataaaattcaaatgatttaggcaaaccctaaaagtagaaagnnnnnnnn-ttatgtgtgacattcatgt |
99 |
Q |
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| T |
4253451 |
cggttcgcatacgttgcttggattaatgatgataaaattcaaatgatttaggcaaaccctaaaagtagaaagaaaaaaaaattatgtgtgacattcatgt |
4253352 |
T |
|
| Q |
100 |
cagtgagtgtatatataaatgaacgtgagaactgaaaaacaacagatagggtattggttgatg-nnnnnnntggtgagttcaatttacaaacatatatta |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4253351 |
cagtgagtgtatatataaatgaacgtgagaactgaaaaacaacagatagggtattggttgatgaaaaaaaatggtgagttcaatttacaaacatatatta |
4253252 |
T |
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| Q |
199 |
ccaagaatgagagtacgtaacaatgatgccaaaacaaagaagaagaaaactgctgctagtg |
259 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
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| T |
4253251 |
ccaagaatgagagtacgtaacgatgatgccaaaacaaagaagaagaaaacagttgctagtg |
4253191 |
T |
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