View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16235_low_4 (Length: 595)

Name: NF16235_low_4
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16235_low_4
NF16235_low_4
[»] chr7 (5 HSPs)
chr7 (1-587)||(25836946-25837532)
chr7 (261-578)||(25860333-25860649)
chr7 (480-578)||(25865914-25866012)
chr7 (180-214)||(32347539-32347573)
chr7 (486-578)||(32347857-32347949)
[»] chr4 (2 HSPs)
chr4 (405-578)||(55837772-55837945)
chr4 (405-578)||(55773561-55773734)
[»] chr3 (12 HSPs)
chr3 (258-373)||(485883-485998)
chr3 (405-578)||(530089-530262)
chr3 (255-578)||(540703-541029)
chr3 (255-578)||(552899-553225)
chr3 (480-579)||(563230-563329)
chr3 (255-318)||(572731-572794)
chr3 (258-378)||(14964092-14964212)
chr3 (480-537)||(51322256-51322313)
chr3 (255-373)||(30858843-30858961)
chr3 (255-309)||(38866661-38866715)
chr3 (462-578)||(572941-573057)
chr3 (486-578)||(14963889-14963981)
[»] scaffold0128 (1 HSPs)
scaffold0128 (480-578)||(17151-17249)
[»] chr1 (8 HSPs)
chr1 (413-577)||(40026796-40026959)
chr1 (486-578)||(48178947-48179039)
chr1 (277-312)||(47873735-47873770)
chr1 (259-314)||(49287234-49287289)
chr1 (258-312)||(2417976-2418030)
chr1 (258-312)||(40140806-40140860)
chr1 (277-311)||(41185859-41185893)
chr1 (534-578)||(49440837-49440881)
[»] chr5 (2 HSPs)
chr5 (170-213)||(43156383-43156426)
chr5 (170-214)||(31266753-31266797)


Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 25836946 - 25837532
Alignment:
Q  1 acttgaccagagaataatctacctcatcatgtaaatgtggaaaacaccaatctaaccagtagaagtttgatctactaggagtttgaagactaccagaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25836946 acttgaccagagaataatctacctcatcatgtaaatgtggaaaacaccaatctaaccagtagaagtttgatctaccaggagtttgaagactaccagaagc 25837045  T
Q  101 cacaatgtattttcgaagtttgttatcatccaccgaatacacatggcattctgcaaatagacagatgcaatacatagaattgctctcatatccccacctg 200  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25837046 cacaatgtgtttccgaagtttgttatcatccaccgaatacacatggcattctgcaaatagacagatgcaatacatagaattgctctcatatccccacctg 25837145  T
Q  201 cttgggttgctcaaagcacggaagtttgtccacgacgaatnnnnnnntgcgacatcacccaaagtttccagcttctcataattcatggttgagaagtcta 300  Q
    |||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25837146 cttgggtttctcaaagcacggaagtttgtccacgacgaataaaaaaatgcgacatcacccaaagtttctagcttctcataattcatggttgagaagtcta 25837245  T
Q  301 ttttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgctcatcacaactaaccaacctaaggcgcgagaaagttacggagggagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25837246 ttttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgctcatcacaactaaccaacctaaggcgcgagaaagttacggagggagc 25837345  T
Q  401 attgttcaattctagaaattttatatttgtagaatttacattgagtatccctatgtccgctttgtcagtgataaggtgtatagtgttatgcaaaactaca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25837346 attgttcaattctagaaattttatatttgtagaatttacattgagtatccctatgtccgctttgtcggtgataaggtgtatagtgttatgcaaaactaca 25837445  T
Q  501 aagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaattgtgatga 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25837446 aagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaactgtgatga 25837532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 261 - 578
Target Start/End: Original strand, 25860333 - 25860649
Alignment:
Q  261 aaagtttccagcttctcataattcatggttgagaagtctattttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgctcatcac 360  Q
    |||||||||| |||  ||||| |||| |||| |||||  || |  |||||||| |||||||||||| |  |||||||||   |||||||||   ||||||    
T  25860333 aaagtttccatcttgacataactcatagttgtgaagtagatctgatacacatctaatactttctcgagcgcaaaatgaattgctagaagctttccatcac 25860432  T
Q  361 aactaaccaacctaaggcgcgagaaagt-tacggagggagcattgttcaattctagaaattttatatttgtagaatttacattgagtatccctatgtccg 459  Q
    | | |||||||||||||||||||||||| ||| |  | |||||||||||||||||| |||||||||||||||||||| |||  |||||  |||||||| |    
T  25860433 agccaaccaacctaaggcgcgagaaagtataccgtag-agcattgttcaattctagcaattttatatttgtagaattcacacagagtactcctatgtcgg 25860531  T
Q  460 ctttgtcagtgataaggtgtatagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcg 559  Q
    | || | ||||| ||  |||||| | || | |||||| |||||||||||||||| | ||| ||||||||| |   ||| |||||| |||  | |||  ||    
T  25860532 ccttctaagtgaaaacatgtatattatt-tacaaaacaacaaagtccacaacatccaatgaatttcccctaaccaaataagtaactcaattaaaattacg 25860630  T
Q  560 agattgatagacatgcaaa 578  Q
    ||||| |||||||||||||    
T  25860631 agattaatagacatgcaaa 25860649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 578
Target Start/End: Original strand, 25865914 - 25866012
Alignment:
Q  480 atagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    ||||| ||||||||||| |||||||||||||| || |||| ||||||| || |||||| ||| | ||||  |||||  ||||| ||||| |||||||||    
T  25865914 atagtattatgcaaaacaacaaagtccacaaccttgcatgaatttccctttttggaataagtgatccaattagaatatcgagactgataaacatgcaaa 25866012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 32347539 - 32347573
Alignment:
Q  180 ttgctctcatatccccacctgcttgggttgctcaa 214  Q
    ||||||||||||||||||||| |||||||||||||    
T  32347539 ttgctctcatatccccacctgtttgggttgctcaa 32347573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 578
Target Start/End: Original strand, 32347857 - 32347949
Alignment:
Q  486 ttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    ||||||||||| |||||||| |||||  ||| |  || || | |||| |||| ||||||||| ||| |||  |||||||||||||||||||||    
T  32347857 ttatgcaaaaccacaaagtcaacaactctccctaaatgtctctttatcgaataagtaacccacccacaatttcgagattgatagacatgcaaa 32347949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 405 - 578
Target Start/End: Complemental strand, 55837945 - 55837772
Alignment:
Q  405 ttcaattctagaaattttatatttgtagaatttacattgagtatccctatgtccgctttgtcagtgataaggtgtatagtgttatgcaaaactacaaagt 504  Q
    |||| ||||| ||| |||||||||| ||||||||  ||||||||||||||||  || |||||  ||| ||  | ||||||||| |||||||| |||||||    
T  55837945 ttcatttctaaaaactttatatttgcagaatttaagttgagtatccctatgttggccttgtcgttgacaacatatatagtgttgtgcaaaacaacaaagt 55837846  T
Q  505 ccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    | ||||   ||||||||| |||| || | |||| ||||||||||||| |||  |||||||||||||||||||||    
T  55837845 caacaatcatccatggatatcccattgttgaataagtaacccaaccaaaatttcgagattgatagacatgcaaa 55837772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 405 - 578
Target Start/End: Complemental strand, 55773734 - 55773561
Alignment:
Q  405 ttcaattctagaaattttatatttgtagaatttacattgagtatccctatgtccgctttgtcagtgataaggtgtatagtgttatgcaaaactacaaagt 504  Q
    |||| ||||| ||| || ||||||| ||||||||  ||||||||||||||||  || |||||  ||| ||  | ||||||||| |||||||| |||||||    
T  55773734 ttcatttctaaaaacttaatatttgcagaatttaagttgagtatccctatgttggccttgtcgttgacaacatatatagtgttgtgcaaaacaacaaagt 55773635  T
Q  505 ccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    | ||||   ||||||||| |||| || | |||| ||||||||||||| |||  |||||||||||||||||||||    
T  55773634 caacaatcatccatggatatcccattgttgaataagtaacccaaccaaaatttcgagattgatagacatgcaaa 55773561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 258 - 373
Target Start/End: Original strand, 485883 - 485998
Alignment:
Q  258 cccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgctcat 357  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||| |||| ||||| || |||||   ||| |||||| |||| ||| ||  |||    
T  485883 cccaaagtttccagcttgacataattcatggttgagaagtctatcttgtaaacattcaatatttcctcggactcaatatgaaccactaaaagttgtccat 485982  T
Q  358 cacaactaaccaacct 373  Q
    |||||| |||||||||    
T  485983 cacaacaaaccaacct 485998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 405 - 578
Target Start/End: Original strand, 530089 - 530262
Alignment:
Q  405 ttcaattctagaaattttatatttgtagaatttacattgagtatccctatgtccgctttgtcagtgataaggtgtatagtgttatgcaaaactacaaagt 504  Q
    |||| ||||| ||||||||||||||| ||||| |  | |||||  |||||||  || |||||||||| ||  | |||||| || |||||||| |||||||    
T  530089 ttcagttctaaaaattttatatttgtggaattcaagtcgagtacacctatgttggccttgtcagtgacaacatatatagtattctgcaaaacaacaaagt 530188  T
Q  505 ccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    | ||||| ||| ||||||||||| || | ||||  ||| |||||||| |||  |||||||| ||||||||||||    
T  530189 caacaaccttcaatggatttccctttgttgaataggtagcccaaccaaaatttcgagattggtagacatgcaaa 530262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 578
Target Start/End: Original strand, 540703 - 541029
Alignment:
Q  255 tcacccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgct 354  Q
    ||||||||||||||||||||   |||||||||||||||||||||||| ||||| |||| ||||| || |||||   ||| |||||  |||| ||| ||      
T  540703 tcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaatatttcctcggaagcaatatgaatcactaaaagttgtc 540802  T
Q  355 catcacaactaaccaacctaaggcgcga---gaaagttacggagggagcattgttcaattctagaaattttatatttgtagaatttacattgagtatccc 451  Q
    ||||||||||||||| ||| ||| | ||     | |||||   ||| | | | |||| ||||| | ||||||||||||| ||||| |  |  ||||  ||    
T  540803 catcacaactaaccatcctgaggagtgaagtagatgttacatcgggtgtactcttcagttctaaatattttatatttgtggaattcaagtcaagtacacc 540902  T
Q  452 tatgtccgctttgtcagtgataaggtgtatagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaacca 551  Q
    |||||  || |||||||||| || || |||||| | ||||||||| |||||||| ||||| ||||||||| || || || | ||||  |||||||||||     
T  540903 tatgttggccttgtcagtgacaacgtatatagtatgatgcaaaacaacaaagtcaacaaccttccatggactttccattgttgaatatgtaacccaaccc 541002  T
Q  552 gaatcgcgagattgatagacatgcaaa 578  Q
     |||  ||||| |||||||||| ||||    
T  541003 aaatttcgagactgatagacatacaaa 541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 578
Target Start/End: Original strand, 552899 - 553225
Alignment:
Q  255 tcacccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgct 354  Q
    ||||||||||||||||||||   |||||||||||||||||||||||| ||||| |||| ||||| || ||| |   ||| |||||  | || ||| ||      
T  552899 tcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaatatttcctcagaagcaatatgaatcaataaaagttgtc 552998  T
Q  355 catcacaactaaccaacctaaggcgcgag---aaagttacggagggagcattgttcaattctagaaattttatatttgtagaatttacattgagtatccc 451  Q
    ||||||||||||||| ||| ||| | |||    | |||||   ||| | | | |||| ||||| ||||||||||||||| ||||| |  |  ||||  ||    
T  552999 catcacaactaaccatcctgaggagtgaggtagatgttacatcgggtgtactcttcagttctaaaaattttatatttgtggaattcaagtcaagtacacc 553098  T
Q  452 tatgtccgctttgtcagtgataaggtgtatagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaacca 551  Q
    |||||  || |||||||||| || || |||||| | ||||||||| |||||||| ||||| ||||||||| || || || | ||||  |||||||||||     
T  553099 tatgttggccttgtcagtgacaacgtatatagtatgatgcaaaacaacaaagtcaacaaccttccatggactttccattgttgaatatgtaacccaaccc 553198  T
Q  552 gaatcgcgagattgatagacatgcaaa 578  Q
     |||  ||||| |||||||||| ||||    
T  553199 aaatttcgagactgatagacatacaaa 553225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 480 - 579
Target Start/End: Original strand, 563230 - 563329
Alignment:
Q  480 atagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaat 579  Q
    ||||| ||||| ||||| |||||||| ||||| ||||||||||||||| || | ||||  ||| |||||||| |||  ||||||||||||||||||||||    
T  563230 atagtattatgaaaaacaacaaagtcaacaaccttccatggatttccctttgttgaataggtagcccaaccaaaatttcgagattgatagacatgcaaat 563329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 572731 - 572794
Alignment:
Q  255 tcacccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacatccaata 318  Q
    ||||||||||||||||||||   |||||||||||||||||||||||| ||||| |||| |||||    
T  572731 tcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaata 572794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 378
Target Start/End: Complemental strand, 14964212 - 14964092
Alignment:
Q  258 cccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgctcat 357  Q
    |||||||||||||  ||| |||||||||||||||||||||| || |||||||||| |  || || || ||| | ||||| ||| |||| ||| |||||||    
T  14964212 cccaaagtttccaatttcacataattcatggttgagaagtcgatcttgtacacattccttatttccttgggcataaaatcaaccactaaaagttgctcat 14964113  T
Q  358 cacaactaaccaacctaaggc 378  Q
     |||| | |||||| ||||||    
T  14964112 tacaatttaccaacttaaggc 14964092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 51322256 - 51322313
Alignment:
Q  480 atagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaat 537  Q
    ||||| ||||||||||| |||||||||||||| || |||||||||||| || ||||||    
T  51322256 atagtattatgcaaaacaacaaagtccacaaccttgcatggatttccctttttggaat 51322313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 373
Target Start/End: Original strand, 30858843 - 30858961
Alignment:
Q  255 tcacccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacatccaatactttctcgggtacaaaatgaacaactagaagctgct 354  Q
    |||||||||||||||| |||   ||||| ||||||||| |||||||| |||||||||   |||  || || || || ||||| ||  |||||||| ||      
T  30858843 tcacccaaagtttccaacttaatataatccatggttgataagtctatcttgtacacactaaatgtttccttggatataaaattaagcactagaagatgtc 30858942  T
Q  355 catcacaactaaccaacct 373  Q
    |||||||||||||||||||    
T  30858943 catcacaactaaccaacct 30858961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 38866661 - 38866715
Alignment:
Q  255 tcacccaaagtttccagcttctcataattcatggttgagaagtctattttgtaca 309  Q
    |||||||||| ||||| |||  ||||| ||||||||||||||||||| |||||||    
T  38866661 tcacccaaagattccaacttgacataagtcatggttgagaagtctatcttgtaca 38866715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 578
Target Start/End: Original strand, 572941 - 573057
Alignment:
Q  462 ttgtcagtgataaggtgtatagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgag 561  Q
    |||||||||| || || |||||| | ||||||||| |||||||| ||||| ||| ||||| || || || | ||||  |||||||||||  |||  ||||    
T  572941 ttgtcagtgacaacgtatatagtatgatgcaaaacaacaaagtcaacaaccttcgatggactttccattgttgaatatgtaacccaacccaaatttcgag 573040  T
Q  562 attgatagacatgcaaa 578  Q
    | |||||||||| ||||    
T  573041 actgatagacatacaaa 573057  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 578
Target Start/End: Complemental strand, 14963981 - 14963889
Alignment:
Q  486 ttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    ||||||||||| |||||||| |||||  ||| ||  |||||| || | |||| |||||||||| || |||   ||||||||||||||||||||    
T  14963981 ttatgcaaaaccacaaagtcaacaaccctccctgagtttcccattgttgaataagtaacccaatcacaattttgagattgatagacatgcaaa 14963889  T

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Target: scaffold0128 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 578
Target Start/End: Complemental strand, 17249 - 17151
Alignment:
Q  480 atagtgttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    ||||| ||||||||||| |||||||||| |||| ||||||||||||| ||| |||||| |||||| |||| |||||  ||||| ||||| |||||||||    
T  17249 atagtattatgcaaaacaacaaagtccagaacagtccatggatttccgcttttggaataagtaactcaactagaatatcgagactgataaacatgcaaa 17151  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 577
Target Start/End: Complemental strand, 40026959 - 40026796
Alignment:
Q  413 tagaaattttatatttgtagaatttacattgagtatccctatgtccgctttgtcagtgataaggtgtatagtgttatgcaaaactacaaagtccacaaca 512  Q
    ||||||||| ||||||| |||||| |   |||||| ||||||||  || |||||||||| ||  | |||  | ||||||||||| |||||||| |||||     
T  40026959 tagaaatttaatatttgcagaattcaagctgagtacccctatgtg-gccttgtcagtgacaacatatattatattatgcaaaaccacaaagtcaacaacc 40026861  T
Q  513 ttccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaa 577  Q
     ||| | |||||||| || | |||| || |||||||||| |||  ||||||||||||||||||||    
T  40026860 ctccctagatttcccattgtcgaataagcaacccaaccacaatttcgagattgatagacatgcaa 40026796  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 578
Target Start/End: Complemental strand, 48179039 - 48178947
Alignment:
Q  486 ttatgcaaaactacaaagtccacaacattccatggatttccccttatggaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    |||||||||||||||||||| |||||  ||| || || || | || | |||| ||||||||||||| |||  |||||||||||||||||||||    
T  48179039 ttatgcaaaactacaaagtcaacaaccctccctgcatctctcgttgtcgaataagtaacccaaccacaatttcgagattgatagacatgcaaa 48178947  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 47873770 - 47873735
Alignment:
Q  277 cataattcatggttgagaagtctattttgtacacat 312  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47873770 cataattcatggttgagaagtctatcttgtacacat 47873735  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 49287289 - 49287234
Alignment:
Q  259 ccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacatcc 314  Q
    ||||||||| ||| ||  ||||| ||||||||||||||||||| ||||||||||||    
T  49287289 ccaaagttttcagtttaacataactcatggttgagaagtctatcttgtacacatcc 49287234  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 2417976 - 2418030
Alignment:
Q  258 cccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacat 312  Q
    |||||||||||||| ||  |||||||||||||||||||| |||| ||||| ||||    
T  2417976 cccaaagtttccagtttgacataattcatggttgagaagcctatcttgtatacat 2418030  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 40140860 - 40140806
Alignment:
Q  258 cccaaagtttccagcttctcataattcatggttgagaagtctattttgtacacat 312  Q
    |||||| ||||||| ||  ||||||||||||||||||||||||| ||||| ||||    
T  40140860 cccaaactttccagtttgacataattcatggttgagaagtctatcttgtatacat 40140806  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 41185893 - 41185859
Alignment:
Q  277 cataattcatggttgagaagtctattttgtacaca 311  Q
    ||||||||||||||||||||||||| |||||||||    
T  41185893 cataattcatggttgagaagtctatcttgtacaca 41185859  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 578
Target Start/End: Original strand, 49440837 - 49440881
Alignment:
Q  534 gaatgagtaacccaaccagaatcgcgagattgatagacatgcaaa 578  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||    
T  49440837 gaataagtaacccaaccacaattacgagattgatagacatgcaaa 49440881  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 43156383 - 43156426
Alignment:
Q  170 atacatagaattgctctcatatccccacctgcttgggttgctca 213  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  43156383 atacatagagttactctcatatccccacctgcttgggttgctca 43156426  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 31266797 - 31266753
Alignment:
Q  170 atacatagaattgctctcatatccccacctgcttgggttgctcaa 214  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||    
T  31266797 atacatagagttgctctcatatccccacctgttggggttgctcaa 31266753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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