View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_40 (Length: 273)
Name: NF16235_low_40
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 40142736 - 40142496
Alignment:
| Q |
16 |
ataaggcttaaacatgttttgaggtcatcaagcaagataaatatcgttcttgtgcatgtttgaaatcaaaggtggatttgacaaaatcatggtgacttgg |
115 |
Q |
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| T |
40142736 |
ataaggcttaaacatgttttgaggtcatcaagcaagataaatatcgttcttctgcatgtttgaaatcac-ggtggatttgacaaaatcatggtgacttgg |
40142638 |
T |
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| Q |
116 |
ttgatgtttcaaagtgtcgtttttgcaaaatcatggtatgccaaacacaccatcaattcaaacatgcactttgtatctcaaaaaagttttgttgct-ttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
40142637 |
ttgatgtttcaaagtgtcgtttttgcaaaatcatggtttgccaaacactccatcaattcaaacatgcactttgtatctcgaaaaagttttgttgcttttt |
40142538 |
T |
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| Q |
215 |
tcaaaatgatcataattggtccctcttaattggacaagagag |
256 |
Q |
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| T |
40142537 |
tcaaaatgatcataattggtccctcttaatcagacaagagag |
40142496 |
T |
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