View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16235_low_42 (Length: 256)
Name: NF16235_low_42
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 42745445 - 42745630
Alignment:
| Q |
1 |
catccttgtagtaggtcttgataatattgcgagatccaacttgttatgatctttacttcttgtttccttacatcctttagccattctggatcttcctttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42745445 |
catccttgtagtaggtcttgataatattgcgagatccaacttgttatgatctttacttcttgtttccttacatcctttagccattctggatcttcctttg |
42745544 |
T |
|
| Q |
101 |
ttgagaatctcaggtctacatgatgagctcctatacaaaacactaaagtgaaaattggaaatagataataaacatatgtattatta |
186 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42745545 |
ttgagaacctcaggtctacatgatgagctcctatacaaaacactaaagtgaaaattggaaatagataataaacatatgtattatta |
42745630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 42738008 - 42738132
Alignment:
| Q |
12 |
taggtcttgataatattgcgagatccaacttgttatgatctttacttcttgtttccttacatcctttagccattctggatcttcctttgttgagaatctc |
111 |
Q |
| |
|
||||||||||| ||||| |||||||||||| || |||||||||||||||||||| ||||| || ||||||| |||||||||||| |||||| | || |
|
|
| T |
42738008 |
taggtcttgatggtattgggagatccaactttcaataatctttacttcttgtttcctcacatctttaagccattttggatcttccttagttgagtacctt |
42738107 |
T |
|
| Q |
112 |
aggtctacatgatgagctcctatac |
136 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
42738108 |
aggtccacatgatgagctcctatac |
42738132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 42745743 - 42745804
Alignment:
| Q |
187 |
atacggtttcaaactaaccttcttttgcaactatggcaattaaagtttttgatatattcttc |
248 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42745743 |
atacagtttcaaactaaccttcttttgcaactatggcaattaaagtttttgatatattcttc |
42745804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 42738210 - 42738258
Alignment:
| Q |
200 |
ctaaccttcttttgcaactatggcaattaaagtttttgatatattcttc |
248 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
42738210 |
ctaaccttctttagcaactatagcaattatagtttttgatatattcttc |
42738258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University