View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16235_low_46 (Length: 249)

Name: NF16235_low_46
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16235_low_46
NF16235_low_46
[»] chr2 (5 HSPs)
chr2 (12-197)||(2716746-2716931)
chr2 (12-197)||(2745199-2745384)
chr2 (12-197)||(2723369-2723554)
chr2 (11-153)||(2711870-2712015)
chr2 (11-151)||(2704222-2704365)
[»] chr7 (9 HSPs)
chr7 (12-71)||(20285130-20285189)
chr7 (12-71)||(20294847-20294906)
chr7 (12-73)||(20231747-20231808)
chr7 (12-73)||(20243819-20243880)
chr7 (12-71)||(20289441-20289500)
chr7 (12-73)||(20264206-20264267)
chr7 (15-71)||(20167900-20167956)
chr7 (12-71)||(20062379-20062438)
chr7 (19-71)||(20279695-20279747)
[»] chr4 (1 HSPs)
chr4 (12-71)||(40823651-40823710)
[»] chr8 (1 HSPs)
chr8 (12-70)||(4159639-4159697)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 2716931 - 2716746
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2716931 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 2716832  T
Q  112 ataatcatcaagcactcactctcttaggatatgtaagtctttttaaattttcgcccatagattcatattacagctcaatattatgt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2716831 ataatcatcaagcactcactctcttaggatatgtaagtctttttaaattttcgcccatagattcatattacagctcaatattatgt 2716746  T

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Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 2745384 - 2745199
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 111  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2745384 gaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 2745285  T
Q  112 ataatcatcaagcactcactctcttaggatatgtaagtctttttaaattttcgcccatagattcatattacagctcaatattatgt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2745284 ataatcatcaagcactcactctcttaggatatgtaagtctttttaaattttcgcccatagattcatattacagctcaatattatgt 2745199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 2723554 - 2723369
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 111  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2723554 gaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 2723455  T
Q  112 ataatcatcaagcactcactctcttaggatatgtaagtctttttaaattttcgcccatagattcatattacagctcaatattatgt 197  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2723454 ataatcatcaagcactcactctcttaggatatgtaagtcttattaaattttcgcccatagattcatattacagctcaatattatgt 2723369  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 2712015 - 2711870
Alignment:
Q  11 agaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttc 110  Q
    ||||||||||||| |||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||     
T  2712015 agaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagataataagtggtagaaaaaacacaagtttt 2711916  T
Q  111 tataatcat---caagcactcactctcttaggatatgtaagtcttt 153  Q
     ||||||||   ||||||||||| ||||||| ||||||||||||||    
T  2711915 cataatcatgagcaagcactcaccctcttagaatatgtaagtcttt 2711870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 2704365 - 2704222
Alignment:
Q  11 agaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttc 110  Q
    |||||| |||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||| || ||||||||     
T  2704365 agaatacgcaatggaggggttgttttcagagaaatcagatgtttttagctttggggttttgctcctcgagataataagtggtaggaagaacacaagtttt 2704266  T
Q  111 tataatcat---caagcactcactctcttaggatatgtaagtct 151  Q
    ||||| |||   |||||||| |  ||||||||||||||||||||    
T  2704265 tataaccatgagcaagcacttaacctcttaggatatgtaagtct 2704222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 20285130 - 20285189
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 71  Q
    |||||||||||| ||||||| |||||||||||||||||| | ||||||||||| ||||||    
T  20285130 gaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgttttg 20285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 20294847 - 20294906
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 71  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||    
T  20294847 gaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttg 20294906  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 20231747 - 20231808
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgct 73  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| || |||||    
T  20231747 gaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgct 20231808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 20243819 - 20243880
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgct 73  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| || |||||    
T  20243819 gaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgct 20243880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 20289441 - 20289500
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 71  Q
    ||||| |||||| ||||| |||||||||||||||||||||| ||||| ||||| ||||||    
T  20289441 gaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttg 20289500  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 20264206 - 20264267
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgct 73  Q
    |||||||||||| ||||||| ||||||||||| |||||||| ||||| ||||| || |||||    
T  20264206 gaatatgcaatgcaaggattattttcagagaagtcagatgtttttagctttggtgtattgct 20264267  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20167956 - 20167900
Alignment:
Q  15 tatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 71  Q
    ||||||||| ||||| | |||||||||||||||||||| ||||| ||||| ||||||    
T  20167956 tatgcaatgcaaggactattttcagagaaatcagatgtgtttagctttggtgttttg 20167900  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 20062438 - 20062379
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 71  Q
    ||||| |||||| ||||| | |||||||||||||||||||| ||||| ||||| ||||||    
T  20062438 gaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttg 20062379  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 20279695 - 20279747
Alignment:
Q  19 caatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 71  Q
    ||||| ||||| | |||||||||||||||||||| ||||| ||||| ||||||    
T  20279695 caatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttg 20279747  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 40823710 - 40823651
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttg 71  Q
    |||||||| ||| ||||| |||||||||||||||||||||| ||||| ||||| ||||||    
T  40823710 gaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttg 40823651  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 4159697 - 4159639
Alignment:
Q  12 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggtttt 70  Q
    |||||||||||||||||| | ||||| |||||||||||||| | ||| ||||| |||||    
T  4159697 gaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagtttt 4159639  T

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