View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_49 (Length: 238)
Name: NF16235_low_49
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 43762451 - 43762241
Alignment:
| Q |
18 |
aatataaacataaactagggatataaagttaacttggtggttcgagtgagagagttaaggatctccagggtatgatccccacccctagcataatatatac |
117 |
Q |
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| T |
43762451 |
aatataaacataaactagggatataaagttaacttggtggttcgagtgagagagttaaggatctcgagggtatgatccccacccctagcataatatatac |
43762352 |
T |
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| Q |
118 |
taagaatacatacaacacattactatgtctaaggttggcatgttctgttaaataaaaaagttacgtctaatgcagtaatactacataagcaaaaatgtaa |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43762351 |
taagaatacatacaacacattactatgtcaaaggttggcatgttctgttaaataaaaaagctacgtctaatgcagtaatactacataagcaaaaatgtaa |
43762252 |
T |
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| Q |
218 |
gatgttcttct |
228 |
Q |
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||||||||||| |
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| T |
43762251 |
gatgttcttct |
43762241 |
T |
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