View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16235_low_5 (Length: 532)
Name: NF16235_low_5
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 10 - 514
Target Start/End: Original strand, 5674636 - 5675138
Alignment:
| Q |
10 |
cagagacacatgcattcactttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcaatggttttttcgacaaatttatt |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5674636 |
cagagacacatgcattcattttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcgatggttttttcgacaaatttatt |
5674735 |
T |
|
| Q |
110 |
caccttattgagagtatgcttagataggagaaaatcatgttcatctattttttctttgtgggtgtaattaccacttgtacttatcacaatatatgagagt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5674736 |
caccttattgagagtatgcttagataggagaaaatcatgttcatctattttttct--gtgggtgtaattaccacttgtacttatcacaatatatgagagt |
5674833 |
T |
|
| Q |
210 |
agtacaccaacaaggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5674834 |
agtacaccaacaaggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatga |
5674933 |
T |
|
| Q |
310 |
cataatttacacagaatcacacaaatgaagcaaaaacaaaactagaaaacatagtactcctgtatttattttcatgacctcaggaaatagagtgtcgtcg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5674934 |
cataatttacacagaatcacacaaatgaagcaaaaacaaaactagaaaacatagtactcctgtatttattttcatgacctcaggaaatagagtgtcgtcg |
5675033 |
T |
|
| Q |
410 |
attcttgtttggttttgttttacctttagcagatacaataccctccaaacgtggaaaaggagaaagcttcccaagtttctttgaaaccgaacttataaac |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5675034 |
attcttgtttggttttattttacctttagcagatacaataccatccaaacgtggaaaaggagaaagcttcccaagtttctttgaaaccgaacttataaac |
5675133 |
T |
|
| Q |
510 |
gattt |
514 |
Q |
| |
|
||||| |
|
|
| T |
5675134 |
gattt |
5675138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University