View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16235_low_51 (Length: 237)
Name: NF16235_low_51
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11040030 - 11039810
Alignment:
| Q |
1 |
cgtcaaacgaagagaatcagaaggtttgaatgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttatactagaagggatagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11040030 |
cgtcaaacgaagagaatcagaaggtttgaatgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttgtactagaagggatagca |
11039931 |
T |
|
| Q |
101 |
tatatttgagaggtggaagttcttagacacgaaaccgaataggaatccatccaatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11039930 |
tatatttgagaggtggaagttcttagacacgaaaccgaataggaatccatccaatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaat |
11039831 |
T |
|
| Q |
201 |
catcatagtcatgtttcaagt |
221 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
11039830 |
catcgtagtcatgtttcaagt |
11039810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 10990487 - 10990298
Alignment:
| Q |
29 |
aatgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttatactagaagggatagcatatatttgagaggtggaagttcttagac |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| || || | | ||| ||||| | |||||||||||||| || || |||| || |
|
|
| T |
10990487 |
aatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtacttaaac |
10990388 |
T |
|
| Q |
129 |
acgaaaccgaataggaatccatccaatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcatcatagtcatgtttca |
218 |
Q |
| |
|
||| |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10990387 |
acggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcttcatagtcatatttca |
10990298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 11024935 - 11024745
Alignment:
| Q |
31 |
tgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttatactagaagggatagcatatatttgagaggtggaagttcttagacac |
130 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| | |||||| || ||||| ||||||||| | |||||||| || || |||||||| |
|
|
| T |
11024935 |
tgaaacgttaaacattttggtgcaaagcgaaagaggaaagctgtcaataacggtaaaagaagatatagcatatgtctgagaggttgaggtacttagacat |
11024836 |
T |
|
| Q |
131 |
gaaaccgaataggaatccatccaatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcatcatagtcatgtttcaagt |
221 |
Q |
| |
|
| |||| |||| ||||| || |||||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11024835 |
ggaaccaaataagaatctatgtcgtctctaatcaaaagtgaacaattgataaagtgatagtcgacaaaatcatcatagtcatgtttcaagt |
11024745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 10929328 - 10929228
Alignment:
| Q |
91 |
agggatagcatatatttgagaggtggaagttcttagacacgaaaccgaataggaatccat-cca--atctctattcaaaagcgaacaattgaaaaagtga |
187 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| |||||||||| |||| ||||||||||||| || ||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
10929328 |
agggatagcgtatgtttgagaggttgaagtgcttagacacggaaccaaataggaatccatatcatcatctctaatcaaaagtgaacaattaaaaaagtga |
10929229 |
T |
|
| Q |
188 |
t |
188 |
Q |
| |
|
| |
|
|
| T |
10929228 |
t |
10929228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University