View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_55 (Length: 223)
Name: NF16235_low_55
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 47532784 - 47532600
Alignment:
| Q |
19 |
atatcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttccgccttcgctcttcatcgtcaacatttctacctcgttt |
118 |
Q |
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| T |
47532784 |
atatcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttccgccttcgctcttcatcgtcatcatttctacctcgttt |
47532685 |
T |
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| Q |
119 |
tttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacattactgtttgaaatttacatagag |
203 |
Q |
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| T |
47532684 |
tttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacattactgtttgaaatttacatagag |
47532600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 39627189 - 39627100
Alignment:
| Q |
93 |
tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta |
182 |
Q |
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| T |
39627189 |
tcatcatcatcatttctaccacgtttattatttgaactaaacaagctagttgtcatacttgaaagtctgcattaatgtttaactacatta |
39627100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 39616467 - 39616378
Alignment:
| Q |
93 |
tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta |
182 |
Q |
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| T |
39616467 |
tcatcatcatcatttctaccacgctttttatttgaactaaacaagctagtcatcatatttgaaagtctgcattaatgttttactacatta |
39616378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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