View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_57 (Length: 204)
Name: NF16235_low_57
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_57 |
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| [»] scaffold0029 (3 HSPs) |
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| [»] scaffold0453 (3 HSPs) |
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Alignment Details
Target: scaffold0029 (Bit Score: 121; Significance: 3e-62; HSPs: 3)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 88149 - 88317
Alignment:
| Q |
19 |
gtaattataataagcatgctactaaacattttttcaaacagggaacaatacaagtaacaatacaagtaaataaacgtgaatagtagctaacctgaaatag |
118 |
Q |
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| T |
88149 |
gtaattataataagcatgctactaaacattttt-caaacagtgaaca------------atacaagtaaataaacgtgaatagtagctaacctgaaatag |
88235 |
T |
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| Q |
119 |
ttggatactttatattagaataacaagcatggcagcagttgcaagcaaattgaattgaatggaaccgccactttgaaatgca |
200 |
Q |
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| T |
88236 |
ttggatactttaaattagaataacaagcatggcagcagctgcaagcaaattgaattgaatggaaccgccactttgaaatgca |
88317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 76466 - 76592
Alignment:
| Q |
74 |
aacaatacaagtaaataaacgtgaatagtagctaacctgaaatagttggatactttatattagaataacaagcatggcagcagttgcaagcaaattgaat |
173 |
Q |
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| T |
76466 |
aacaatacaagtaaataaacgtgaatagtagctaacctgaaatagttggatactttaaattagaataaaaagcatggcagcagctgcaagcaaattgaat |
76565 |
T |
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| Q |
174 |
tgaatggaaccgccactttgaaatgca |
200 |
Q |
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| T |
76566 |
tgaatggaaccgccactttgaaatgca |
76592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 76424 - 76463
Alignment:
| Q |
19 |
gtaattataataagcatgctactaaacattttttcaaacag |
59 |
Q |
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| T |
76424 |
gtaattataataagcatgctgctaaaca-tttttcaaacag |
76463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 10184 - 10090
Alignment:
| Q |
103 |
agctaacctgaaatagttggatactttatattagaataacaagcatggcagcagttgcaagcaaattgaattgaatggaaccgccactttgaaat |
197 |
Q |
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| T |
10184 |
agctaacctgaaatagttggatactttaaattagaataacaagcatggcagcagctgcaagaaaattgaattgaatggaaccaccactttgaaat |
10090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 12249 - 12195
Alignment:
| Q |
19 |
gtaattataataagcatgctactaaacattttttcaaacagggaacaatacaagtaa |
75 |
Q |
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| T |
12249 |
gtaattataataagcatgctactaaacat-ttttcaaacagtgaa-aatacaagtaa |
12195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 108
Target Start/End: Complemental strand, 12205 - 12174
Alignment:
| Q |
77 |
aatacaagtaaataaacgtgaatagtagctaa |
108 |
Q |
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| T |
12205 |
aatacaagtaaataaacgtgaatagtagctaa |
12174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 7158230 - 7158154
Alignment:
| Q |
124 |
tactttatattagaataacaagcatggcagcagttgcaagcaaattgaattgaatggaaccgccactttgaaatgca |
200 |
Q |
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| T |
7158230 |
tactttaaattagaataacaagcatggcagcagttgcaagcaaattgaattgaatggaaccgccactttgaaatgca |
7158154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 7159413 - 7159315
Alignment:
| Q |
19 |
gtaattataataagcatgctactaaacattttttcaaacagggaacaatacaagtaacaatacaagtaaataaacgtgaatagtagctaacctgaaatag |
118 |
Q |
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| T |
7159413 |
gtaattataataagcatgctactaaacatttttg-aaacagggaacaatacaagtaa------------ataaacatgaatagtagctaacctgaaatag |
7159327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 16636255 - 16636146
Alignment:
| Q |
86 |
aaataaacgtgaatagtagct-aacctgaaatagttggatactttatattagaataacaagcatggcagcagttgcaagcaaattgaattgaatggaacc |
184 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||||||||| ||||||| ||| |||||||||| |||||||| ||| | ||||||||||| |
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| T |
16636255 |
aaataaacgtgaataggagcagaacctgaaactgttggatactttaaattagaaatacagccatggcagcaa--gcaagcaatttgcaatgaatggaacc |
16636158 |
T |
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| Q |
185 |
gccactttgaaa |
196 |
Q |
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| T |
16636157 |
gtcactttgaaa |
16636146 |
T |
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