View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_6 (Length: 499)
Name: NF16235_low_6
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 39975944 - 39975476
Alignment:
| Q |
20 |
agattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaac |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975944 |
agattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaac |
39975845 |
T |
|
| Q |
120 |
catatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975844 |
catatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagc |
39975745 |
T |
|
| Q |
220 |
aagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgt |
319 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975744 |
aagcggattgaagtgtttggatcctatttttttcttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgt |
39975645 |
T |
|
| Q |
320 |
gctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975644 |
gctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagt |
39975545 |
T |
|
| Q |
420 |
atatgatgcttgcagggaatgaagggattgttccacaagttagtaatttgaaaaaatgctattgatgat |
488 |
Q |
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| T |
39975544 |
atatgatgcttgcagggaatgaagggattgttcaacaagttagtaatttgaaaaaatgctattgatgat |
39975476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 25552961 - 25552899
Alignment:
| Q |
92 |
tgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgag |
154 |
Q |
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||||| ||||||||||| ||||||||||| || ||| ||||||||||| | |||||||||||| |
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| T |
25552961 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgag |
25552899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 23 - 444
Target Start/End: Complemental strand, 16147719 - 16147298
Alignment:
| Q |
23 |
ttaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccat |
122 |
Q |
| |
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|||||||| || ||| |||||||| | ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||| | |
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| T |
16147719 |
ttaacaagggatagagaacaagatagggaaacaatgcaaaggttgttaagtgaaggtgatttagttgtttgtcctgaaggaacaacttgtagggaacctt |
16147620 |
T |
|
| Q |
123 |
atttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaag |
222 |
Q |
| |
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|||| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||||| || |
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| T |
16147619 |
atttattaaggtttagttcactttttgctgaacttgctgatgagattgttccagtggctatgaatgttaatgtgagtatgttttatggtacaacagctag |
16147520 |
T |
|
| Q |
223 |
cggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgct |
322 |
Q |
| |
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||||| || |||||||| || ||||||||||| ||| |||||| ||||| || | |||| |||||||| |||||||| || |||||| |
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| T |
16147519 |
tggattaaaatgtttggactcttttctatttttgatgaatccatggcctagttataatattgaagtacttgaaaaggtaccaaaagaactcacttgtgct |
16147420 |
T |
|
| Q |
323 |
ggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagtata |
422 |
Q |
| |
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|| ||||| || | |||||||||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||| ||||||||||| |||| |
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| T |
16147419 |
ggtggaaaatctccttttgaagtggctaattatatacaaagagagttgggtgatgctttagggtttgagtgtacaaatattacaaggagggataaatata |
16147320 |
T |
|
| Q |
423 |
tgatgcttgcagggaatgaagg |
444 |
Q |
| |
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||||| | || ||||||||||| |
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| T |
16147319 |
tgatgttagctgggaatgaagg |
16147298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 441
Target Start/End: Original strand, 16195219 - 16195634
Alignment:
| Q |
26 |
acaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatt |
125 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| ||| || || ||||||||||||||||| || |||||||||||||| ||||| ||||| |||| |
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| T |
16195219 |
acaagagacagagaacaagatagggaaacaatgcaaaggttgcttagggaaggtgatttagttgtgtgccctgaaggaacaacttgtagggaaccttatt |
16195318 |
T |
|
| Q |
126 |
tgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcgg |
225 |
Q |
| |
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| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||||| || || |
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| T |
16195319 |
tattaaggtttagttcactttttgctgaaattgctgatgagattgttccagtggctatgaatgataatgtgagtatgttttatggtacaacagctagtgg |
16195418 |
T |
|
| Q |
226 |
attgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctgga |
325 |
Q |
| |
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||| || |||||||| ||| ||||||||||| |||||||||| | ||| |||| |||| || || || |||||||| || |||||||| |
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| T |
16195419 |
attaaaatgtttggacccttttctatttttgatgaatccatggccaagttataacattgaaatgcttgataaagttccaaaagaactcacttgtgctggt |
16195518 |
T |
|
| Q |
326 |
ggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagtatatga |
425 |
Q |
| |
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|||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||| | |||||||| || ||| |||| ||||||||||| ||||||| |
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| T |
16195519 |
ggaaagtctccttttgaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggataaatatatga |
16195618 |
T |
|
| Q |
426 |
tgcttgcagggaatga |
441 |
Q |
| |
|
|| | || |||||||| |
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| T |
16195619 |
tgttagctgggaatga |
16195634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 38792363 - 38792285
Alignment:
| Q |
75 |
aaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctga |
153 |
Q |
| |
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|||| ||| ||||||| ||||| ||||| || || ||||||||||| ||||| ||||||||||| || |||||| |||| |
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| T |
38792363 |
aaggggatgtagttgtgtgtccagaagggaccacttgtagagaaccttatttattaaggtttagctctttgttttctga |
38792285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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